Gene : Glyma.02G280200 G. max Wm82.a2.v1
Defline:  (1 of 24) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2802
Name:  ? Glyma.02G280200 Secondary Identifier:  ? PAC:30510384
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G280200 0.5kb upstream 0.5kb upstream 3013 true Chr02: 46261637-46264649 Glycine max
Glyma.02G280200 0.5kb upstream 0.5kb upstream 500 false Chr02: 46264150-46264649 Glycine max
Glyma.02G280200 0.5kb downstream 0.5kb downstream 3013 true Chr02: 46261137-46264149 Glycine max
Glyma.02G280200 0.5kb downstream 0.5kb downstream 500 false Chr02: 46261137-46261636 Glycine max
Glyma.02G280200 1.0kb upstream 1.0kb upstream 3513 true Chr02: 46261637-46265149 Glycine max
Glyma.02G280200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 46264150-46265149 Glycine max
Glyma.02G280200 1.0kb downstream 1.0kb downstream 3513 true Chr02: 46260637-46264149 Glycine max
Glyma.02G280200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 46260637-46261636 Glycine max
Glyma.02G280200 2.0kb upstream 2.0kb upstream 4513 true Chr02: 46261637-46266149 Glycine max
Glyma.02G280200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 46264150-46266149 Glycine max
Glyma.02G280200 2.0kb downstream 2.0kb downstream 4513 true Chr02: 46259637-46264149 Glycine max
Glyma.02G280200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 46259637-46261636 Glycine max
Glyma.02G280200 5.0kb upstream 5.0kb upstream 7513 true Chr02: 46261637-46269149 Glycine max
Glyma.02G280200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46264150-46269149 Glycine max
Glyma.02G280200 5.0kb downstream 5.0kb downstream 7513 true Chr02: 46256637-46264149 Glycine max
Glyma.02G280200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 46256637-46261636 Glycine max
Glyma.02G280200 10.0kb upstream 10.0kb upstream 12513 true Chr02: 46261637-46274149 Glycine max
Glyma.02G280200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46264150-46274149 Glycine max
Glyma.02G280200 10.0kb downstream 10.0kb downstream 12513 true Chr02: 46251637-46264149 Glycine max
Glyma.02G280200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 46251637-46261636 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312979 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.28329 0.0 5.0301   High
cufflinks 0.81517 0.0 3.57453    
cufflinks 0.376001 0.0 1.83632    
cufflinks 0.737733 0.0 4.30571    
cufflinks 0.651791 0.0 2.92906    
cufflinks 0.210955 0.0 1.00974 Low Low
cufflinks 0.676111 0.0 2.99652    
cufflinks 0.478747 0.0 2.22175    
cufflinks 0.528962 0.0 2.38507    
cufflinks 0.085     Low Low
cufflinks 0.279        
cufflinks 0.33        
cufflinks 0.172        
cufflinks 0.251        
cufflinks 0.225        
cufflinks 0.48        
cufflinks 0.074       Low
cufflinks 0.58        
cufflinks 0.444        
cufflinks 0.592        
cufflinks 0.595        
cufflinks 0.598        
cufflinks 0.427        
cufflinks 0.194        
cufflinks 0.617       High
cufflinks 0.35        

0 Strain