Gene : Glyma.18G275000 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2750
Name:  ? Glyma.18G275000 Secondary Identifier:  ? PAC:30558573
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G275000 0.5kb upstream 0.5kb upstream 3199 true Chr18: 55717633-55720831 Glycine max
Glyma.18G275000 0.5kb upstream 0.5kb upstream 500 false Chr18: 55717633-55718132 Glycine max
Glyma.18G275000 0.5kb downstream 0.5kb downstream 3199 true Chr18: 55718133-55721331 Glycine max
Glyma.18G275000 0.5kb downstream 0.5kb downstream 500 false Chr18: 55720832-55721331 Glycine max
Glyma.18G275000 1.0kb upstream 1.0kb upstream 3699 true Chr18: 55717133-55720831 Glycine max
Glyma.18G275000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 55717133-55718132 Glycine max
Glyma.18G275000 1.0kb downstream 1.0kb downstream 3699 true Chr18: 55718133-55721831 Glycine max
Glyma.18G275000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 55720832-55721831 Glycine max
Glyma.18G275000 2.0kb upstream 2.0kb upstream 4699 true Chr18: 55716133-55720831 Glycine max
Glyma.18G275000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 55716133-55718132 Glycine max
Glyma.18G275000 2.0kb downstream 2.0kb downstream 4699 true Chr18: 55718133-55722831 Glycine max
Glyma.18G275000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 55720832-55722831 Glycine max
Glyma.18G275000 5.0kb upstream 5.0kb upstream 7699 true Chr18: 55713133-55720831 Glycine max
Glyma.18G275000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 55713133-55718132 Glycine max
Glyma.18G275000 5.0kb downstream 5.0kb downstream 7699 true Chr18: 55718133-55725831 Glycine max
Glyma.18G275000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 55720832-55725831 Glycine max
Glyma.18G275000 10.0kb upstream 10.0kb upstream 12699 true Chr18: 55708133-55720831 Glycine max
Glyma.18G275000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 55708133-55718132 Glycine max
Glyma.18G275000 10.0kb downstream 10.0kb downstream 12699 true Chr18: 55718133-55730831 Glycine max
Glyma.18G275000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 55720832-55730831 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122311870 5265 Fabidae View MSA
124062033 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.71446 0.0 8.21954   High
cufflinks 1.22935 0.0 4.1434    
cufflinks 0.703028 0.0 2.49019    
cufflinks 1.05298 0.0 3.60873    
cufflinks 0.559301 0.0 2.02223   Low
cufflinks 0.604513 0.0 2.17134   Low
cufflinks 1.33728 0.0 4.4729    
cufflinks 0.988391 0.0 3.4078    
cufflinks 1.18368 0.0 4.00796    
cufflinks 0.46        
cufflinks 0.263       Low
cufflinks 1.043        
cufflinks 0.645        
cufflinks 0.972        
cufflinks 0.427        
cufflinks 0.919        
cufflinks 0.271       Low
cufflinks 0.998        
cufflinks 1.077        
cufflinks 0.909        
cufflinks 0.182       Low
cufflinks 1.068        
cufflinks 1.32       High
cufflinks 0.319        
cufflinks 1.106        
cufflinks 0.257       Low

0 Strain