Gene : Glyma.02G047500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS Genomic Order:  475
Name:  ? Glyma.02G047500 Secondary Identifier:  ? PAC:30507994
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G047500 0.5kb upstream 0.5kb upstream 1793 true Chr02: 4373609-4375401 Glycine max
Glyma.02G047500 0.5kb upstream 0.5kb upstream 500 false Chr02: 4374902-4375401 Glycine max
Glyma.02G047500 0.5kb downstream 0.5kb downstream 1793 true Chr02: 4373109-4374901 Glycine max
Glyma.02G047500 0.5kb downstream 0.5kb downstream 500 false Chr02: 4373109-4373608 Glycine max
Glyma.02G047500 1.0kb upstream 1.0kb upstream 2293 true Chr02: 4373609-4375901 Glycine max
Glyma.02G047500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4374902-4375901 Glycine max
Glyma.02G047500 1.0kb downstream 1.0kb downstream 2293 true Chr02: 4372609-4374901 Glycine max
Glyma.02G047500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4372609-4373608 Glycine max
Glyma.02G047500 2.0kb upstream 2.0kb upstream 3293 true Chr02: 4373609-4376901 Glycine max
Glyma.02G047500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4374902-4376901 Glycine max
Glyma.02G047500 2.0kb downstream 2.0kb downstream 3293 true Chr02: 4371609-4374901 Glycine max
Glyma.02G047500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4371609-4373608 Glycine max
Glyma.02G047500 5.0kb upstream 5.0kb upstream 6293 true Chr02: 4373609-4379901 Glycine max
Glyma.02G047500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4374902-4379901 Glycine max
Glyma.02G047500 5.0kb downstream 5.0kb downstream 6293 true Chr02: 4368609-4374901 Glycine max
Glyma.02G047500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4368609-4373608 Glycine max
Glyma.02G047500 10.0kb upstream 10.0kb upstream 11293 true Chr02: 4373609-4384901 Glycine max
Glyma.02G047500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4374902-4384901 Glycine max
Glyma.02G047500 10.0kb downstream 10.0kb downstream 11293 true Chr02: 4363609-4374901 Glycine max
Glyma.02G047500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4363609-4373608 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305055 5265 Fabidae View MSA
124063967 5270 Rosid View MSA
123747748 5271 Pentapetalae View MSA
122791026 5272 Eudicot View MSA
122042982 5273 Angiosperm View MSA
121347174 5274 Embryophyte View MSA
123428407 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.08864 0.0 15.2397    
cufflinks 4.7078 0.0 14.4149    
cufflinks 3.73039 0.0 11.9053   Low
cufflinks 5.28116 0.0 15.8496    
cufflinks 6.55275 0.0 18.8243    
cufflinks 4.07181 0.0 12.5424   Low
cufflinks 7.59739 0.0 21.5069   High
cufflinks 5.14143 0.0 15.5863    
cufflinks 6.05848 0.0 17.8033    
cufflinks 5.615        
cufflinks 3.636        
cufflinks 3.842        
cufflinks 4.834        
cufflinks 7.456     High High
cufflinks 3.231       Low
cufflinks 3.471        
cufflinks 7.333     High High
cufflinks 4.345        
cufflinks 4.202        
cufflinks 3.362        
cufflinks 4.193        
cufflinks 3.71        
cufflinks 4.652        
cufflinks 3.505        
cufflinks 3.389        
cufflinks 5.82       High

0 Strain