Gene : Glyma.01G160400 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR33070:SF3 - EXPRESSED PROTEIN Genomic Order:  1604
Name:  ? Glyma.01G160400 Secondary Identifier:  ? PAC:30542186
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G160400 0.5kb upstream 0.5kb upstream 1572 true Chr01: 49888035-49889606 Glycine max
Glyma.01G160400 0.5kb upstream 0.5kb upstream 500 false Chr01: 49888035-49888534 Glycine max
Glyma.01G160400 0.5kb downstream 0.5kb downstream 1572 true Chr01: 49888535-49890106 Glycine max
Glyma.01G160400 0.5kb downstream 0.5kb downstream 500 false Chr01: 49889607-49890106 Glycine max
Glyma.01G160400 1.0kb upstream 1.0kb upstream 2072 true Chr01: 49887535-49889606 Glycine max
Glyma.01G160400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49887535-49888534 Glycine max
Glyma.01G160400 1.0kb downstream 1.0kb downstream 2072 true Chr01: 49888535-49890606 Glycine max
Glyma.01G160400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49889607-49890606 Glycine max
Glyma.01G160400 2.0kb upstream 2.0kb upstream 3072 true Chr01: 49886535-49889606 Glycine max
Glyma.01G160400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49886535-49888534 Glycine max
Glyma.01G160400 2.0kb downstream 2.0kb downstream 3072 true Chr01: 49888535-49891606 Glycine max
Glyma.01G160400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49889607-49891606 Glycine max
Glyma.01G160400 5.0kb upstream 5.0kb upstream 6072 true Chr01: 49883535-49889606 Glycine max
Glyma.01G160400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49883535-49888534 Glycine max
Glyma.01G160400 5.0kb downstream 5.0kb downstream 6072 true Chr01: 49888535-49894606 Glycine max
Glyma.01G160400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49889607-49894606 Glycine max
Glyma.01G160400 10.0kb upstream 10.0kb upstream 11072 true Chr01: 49878535-49889606 Glycine max
Glyma.01G160400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49878535-49888534 Glycine max
Glyma.01G160400 10.0kb downstream 10.0kb downstream 11072 true Chr01: 49888535-49899606 Glycine max
Glyma.01G160400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49889607-49899606 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314618 5265 Fabidae View MSA
124069570 5270 Rosid View MSA
123753428 5271 Pentapetalae View MSA
122797760 5272 Eudicot View MSA
122043809 5273 Angiosperm View MSA
121310191 5274 Embryophyte View MSA
123347751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0463498 0.0 0.197519 Low Low
cufflinks 0.109883 0.0 0.443679 Low  
cufflinks 0.479369 0.0 1.82475    
cufflinks 0.121923 0.0 0.489971 Low  
cufflinks 0.764755 0.0 2.85544   High
cufflinks 0.819697 0.0 3.05066   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.109151 0.0 0.440323 Low  
cufflinks 0.36442 0.0 1.40551    
cufflinks 0.028     Low  
cufflinks 0.035     Low  
cufflinks 0.515        
cufflinks 4.901       High
cufflinks 1.03       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.106     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low  

0 Strain