Gene : Glyma.01G178800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR16201:SF43 - PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN Genomic Order:  1788
Name:  ? Glyma.01G178800 Secondary Identifier:  ? PAC:30542488
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G178800 0.5kb upstream 0.5kb upstream 6204 true Chr01: 51487134-51493337 Glycine max
Glyma.01G178800 0.5kb upstream 0.5kb upstream 500 false Chr01: 51492838-51493337 Glycine max
Glyma.01G178800 0.5kb downstream 0.5kb downstream 6204 true Chr01: 51486634-51492837 Glycine max
Glyma.01G178800 0.5kb downstream 0.5kb downstream 500 false Chr01: 51486634-51487133 Glycine max
Glyma.01G178800 1.0kb upstream 1.0kb upstream 6704 true Chr01: 51487134-51493837 Glycine max
Glyma.01G178800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51492838-51493837 Glycine max
Glyma.01G178800 1.0kb downstream 1.0kb downstream 6704 true Chr01: 51486134-51492837 Glycine max
Glyma.01G178800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51486134-51487133 Glycine max
Glyma.01G178800 2.0kb upstream 2.0kb upstream 7704 true Chr01: 51487134-51494837 Glycine max
Glyma.01G178800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51492838-51494837 Glycine max
Glyma.01G178800 2.0kb downstream 2.0kb downstream 7704 true Chr01: 51485134-51492837 Glycine max
Glyma.01G178800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51485134-51487133 Glycine max
Glyma.01G178800 5.0kb upstream 5.0kb upstream 10704 true Chr01: 51487134-51497837 Glycine max
Glyma.01G178800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51492838-51497837 Glycine max
Glyma.01G178800 5.0kb downstream 5.0kb downstream 10704 true Chr01: 51482134-51492837 Glycine max
Glyma.01G178800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51482134-51487133 Glycine max
Glyma.01G178800 10.0kb upstream 10.0kb upstream 15704 true Chr01: 51487134-51502837 Glycine max
Glyma.01G178800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51492838-51502837 Glycine max
Glyma.01G178800 10.0kb downstream 10.0kb downstream 15704 true Chr01: 51477134-51492837 Glycine max
Glyma.01G178800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51477134-51487133 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314760 5265 Fabidae View MSA
124069228 5270 Rosid View MSA
123744314 5271 Pentapetalae View MSA
122789645 5272 Eudicot View MSA
122043599 5273 Angiosperm View MSA
121344706 5274 Embryophyte View MSA
123427265 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.148857 0.0 0.585887 Low Low
cufflinks 0.90283 0.0 5.53627    
cufflinks 1.44044 0.0 8.30877    
cufflinks 6.22571 0.0 27.0747    
cufflinks 2.56108 0.0 13.4403    
cufflinks 1.26064 0.0 5.47885    
cufflinks 27.4784 0.0 100.696 High High
cufflinks 0.279531 0.0 1.3974   Low
cufflinks 2.1188 0.0 10.4427    
cufflinks 0.008     Low Low
cufflinks 2.074       High
cufflinks 0.386        
cufflinks 0.72        
cufflinks 1.199       High
cufflinks 0.053        
cufflinks 0.287        
cufflinks 0.045     Low Low
cufflinks 0.5        
cufflinks 0.23        
cufflinks 0.106        
cufflinks 1.035       High
cufflinks 0.04     Low Low
cufflinks 0.035     Low Low
cufflinks 1.341       High
cufflinks 0.326        
cufflinks 0.184        

0 Strain