Gene : Glyma.17G075400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12775 - PROTEIN C20ORF43 HOMOLOG Genomic Order:  754
Name:  ? Glyma.17G075400 Secondary Identifier:  ? PAC:30481791
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G075400 0.5kb upstream 0.5kb upstream 2272   true Chr17: 5919182-5921453 Glycine max
Glyma.17G075400 0.5kb upstream 0.5kb upstream 500   false Chr17: 5919182-5919681 Glycine max
Glyma.17G075400 0.5kb downstream 0.5kb downstream 2272   true Chr17: 5919682-5921953 Glycine max
Glyma.17G075400 0.5kb downstream 0.5kb downstream 500   false Chr17: 5921454-5921953 Glycine max
Glyma.17G075400 1.0kb upstream 1.0kb upstream 2772   true Chr17: 5918682-5921453 Glycine max
Glyma.17G075400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 5918682-5919681 Glycine max
Glyma.17G075400 1.0kb downstream 1.0kb downstream 2772   true Chr17: 5919682-5922453 Glycine max
Glyma.17G075400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 5921454-5922453 Glycine max
Glyma.17G075400 2.0kb upstream 2.0kb upstream 3772   true Chr17: 5917682-5921453 Glycine max
Glyma.17G075400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 5917682-5919681 Glycine max
Glyma.17G075400 2.0kb downstream 2.0kb downstream 3772   true Chr17: 5919682-5923453 Glycine max
Glyma.17G075400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 5921454-5923453 Glycine max
Glyma.17G075400 5.0kb upstream 5.0kb upstream 6772   true Chr17: 5914682-5921453 Glycine max
Glyma.17G075400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 5914682-5919681 Glycine max
Glyma.17G075400 5.0kb downstream 5.0kb downstream 6772   true Chr17: 5919682-5926453 Glycine max
Glyma.17G075400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 5921454-5926453 Glycine max
Glyma.17G075400 10.0kb upstream 10.0kb upstream 11772   true Chr17: 5909682-5921453 Glycine max
Glyma.17G075400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 5909682-5919681 Glycine max
Glyma.17G075400 10.0kb downstream 10.0kb downstream 11772   true Chr17: 5919682-5931453 Glycine max
Glyma.17G075400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 5921454-5931453 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308220 5265 Fabidae View MSA
124066786 5270 Rosid View MSA
123747269 5271 Pentapetalae View MSA
122787080 5272 Eudicot View MSA
122046209 5273 Angiosperm View MSA
121350063 5274 Embryophyte View MSA
123426844 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.0684 0.0 42.9228    
cufflinks 14.0717 0.0 37.7077    
cufflinks 15.1027 0.0 40.3926    
cufflinks 13.7001 0.0 36.7353    
cufflinks 15.2957 0.0 40.8833    
cufflinks 16.694 0.0 44.5631    
cufflinks 20.0125 0.0 53.4049   High
cufflinks 12.9281 0.0 34.7382   Low
cufflinks 13.2791 0.0 35.6347    
cufflinks 12.062     High  
cufflinks 15.965     High  
cufflinks 12.437     High  
cufflinks 10.192     High Low
cufflinks 9.736     High Low
cufflinks 11.877     High  
cufflinks 18.899     High High
cufflinks 15.675     High  
cufflinks 10.202     High Low
cufflinks 14.652     High  
cufflinks 17.295     High High
cufflinks 11.917     High  
cufflinks 17.038     High High
cufflinks 14.638     High  
cufflinks 14.49     High  
cufflinks 17.899     High High
cufflinks 13.526     High  

0 Strain