Gene : Glyma.16G196400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24128:SF13 - E3 UBIQUITIN-PROTEIN LIGASE XBAT33 Genomic Order:  1964
Name:  ? Glyma.16G196400 Secondary Identifier:  ? PAC:30559806
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G196400 0.5kb upstream 0.5kb upstream 8798 true Chr16: 35782198-35790995 Glycine max
Glyma.16G196400 0.5kb upstream 0.5kb upstream 500 false Chr16: 35790496-35790995 Glycine max
Glyma.16G196400 0.5kb downstream 0.5kb downstream 8798 true Chr16: 35781698-35790495 Glycine max
Glyma.16G196400 0.5kb downstream 0.5kb downstream 500 false Chr16: 35781698-35782197 Glycine max
Glyma.16G196400 1.0kb upstream 1.0kb upstream 9298 true Chr16: 35782198-35791495 Glycine max
Glyma.16G196400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 35790496-35791495 Glycine max
Glyma.16G196400 1.0kb downstream 1.0kb downstream 9298 true Chr16: 35781198-35790495 Glycine max
Glyma.16G196400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 35781198-35782197 Glycine max
Glyma.16G196400 2.0kb upstream 2.0kb upstream 10298 true Chr16: 35782198-35792495 Glycine max
Glyma.16G196400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 35790496-35792495 Glycine max
Glyma.16G196400 2.0kb downstream 2.0kb downstream 10298 true Chr16: 35780198-35790495 Glycine max
Glyma.16G196400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 35780198-35782197 Glycine max
Glyma.16G196400 5.0kb upstream 5.0kb upstream 13298 true Chr16: 35782198-35795495 Glycine max
Glyma.16G196400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 35790496-35795495 Glycine max
Glyma.16G196400 5.0kb downstream 5.0kb downstream 13298 true Chr16: 35777198-35790495 Glycine max
Glyma.16G196400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 35777198-35782197 Glycine max
Glyma.16G196400 10.0kb upstream 10.0kb upstream 18298 true Chr16: 35782198-35800495 Glycine max
Glyma.16G196400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 35790496-35800495 Glycine max
Glyma.16G196400 10.0kb downstream 10.0kb downstream 18298 true Chr16: 35772198-35790495 Glycine max
Glyma.16G196400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 35772198-35782197 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311644 5265 Fabidae View MSA
124061674 5270 Rosid View MSA
123746531 5271 Pentapetalae View MSA
122792004 5272 Eudicot View MSA
122042206 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348775 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.64649 0.0 10.4915   Low
cufflinks 5.77431 0.0 21.3744    
cufflinks 7.21507 0.0 25.8281   High
cufflinks 6.32137 0.0 23.5363    
cufflinks 5.86052 0.0 21.6814    
cufflinks 5.35109 0.0 17.4695    
cufflinks 5.20627 0.0 19.7765    
cufflinks 5.9901 0.0 22.1071    
cufflinks 4.99885 0.0 19.044    
cufflinks 0.638        
cufflinks 0.649        
cufflinks 0.846        
cufflinks 0.58        
cufflinks 0.525       Low
cufflinks 0.39       Low
cufflinks 0.744        
cufflinks 0.759        
cufflinks 0.837        
cufflinks 0.906       High
cufflinks 0.586        
cufflinks 0.876        
cufflinks 0.617        
cufflinks 0.755        
cufflinks 0.843        
cufflinks 0.586        
cufflinks 1.15       High

0 Strain