Gene : Glyma.16G146900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23029:SF39 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14 Genomic Order:  1469
Name:  ? Glyma.16G146900 Secondary Identifier:  ? PAC:30558924
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ANAEROFRUCAT-PWY Glycine max pathologic  
Gmax ANAGLYCOLYSIS-PWY Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G146900 0.5kb upstream 0.5kb upstream 3073 true Chr16: 30763467-30766539 Glycine max
Glyma.16G146900 0.5kb upstream 0.5kb upstream 500 false Chr16: 30766040-30766539 Glycine max
Glyma.16G146900 0.5kb downstream 0.5kb downstream 3073 true Chr16: 30762967-30766039 Glycine max
Glyma.16G146900 0.5kb downstream 0.5kb downstream 500 false Chr16: 30762967-30763466 Glycine max
Glyma.16G146900 1.0kb upstream 1.0kb upstream 3573 true Chr16: 30763467-30767039 Glycine max
Glyma.16G146900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30766040-30767039 Glycine max
Glyma.16G146900 1.0kb downstream 1.0kb downstream 3573 true Chr16: 30762467-30766039 Glycine max
Glyma.16G146900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30762467-30763466 Glycine max
Glyma.16G146900 2.0kb upstream 2.0kb upstream 4573 true Chr16: 30763467-30768039 Glycine max
Glyma.16G146900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30766040-30768039 Glycine max
Glyma.16G146900 2.0kb downstream 2.0kb downstream 4573 true Chr16: 30761467-30766039 Glycine max
Glyma.16G146900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30761467-30763466 Glycine max
Glyma.16G146900 5.0kb upstream 5.0kb upstream 7573 true Chr16: 30763467-30771039 Glycine max
Glyma.16G146900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30766040-30771039 Glycine max
Glyma.16G146900 5.0kb downstream 5.0kb downstream 7573 true Chr16: 30758467-30766039 Glycine max
Glyma.16G146900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30758467-30763466 Glycine max
Glyma.16G146900 10.0kb upstream 10.0kb upstream 12573 true Chr16: 30763467-30776039 Glycine max
Glyma.16G146900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30766040-30776039 Glycine max
Glyma.16G146900 10.0kb downstream 10.0kb downstream 12573 true Chr16: 30753467-30766039 Glycine max
Glyma.16G146900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30753467-30763466 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302979 5265 Fabidae View MSA
124068498 5270 Rosid View MSA
123741011 5271 Pentapetalae View MSA
122790406 5272 Eudicot View MSA
122045946 5273 Angiosperm View MSA
121346308 5274 Embryophyte View MSA
123380364 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0956 0.0 29.8983    
cufflinks 9.51607 0.0 25.9077   Low
cufflinks 10.2861 0.0 27.9262    
cufflinks 16.9545 0.0 45.2373    
cufflinks 18.4003 0.0 49.1147    
cufflinks 17.0703 0.0 45.5413    
cufflinks 8.9561 0.0 24.4034   Low
cufflinks 22.312 0.0 59.6873 High High
cufflinks 12.6622 0.0 33.9601    
cufflinks 10.935     High High
cufflinks 5.464        
cufflinks 5.763        
cufflinks 10.922     High High
cufflinks 13.867     High High
cufflinks 4.979        
cufflinks 5.166        
cufflinks 10.684     High High
cufflinks 11.55     High High
cufflinks 6.434        
cufflinks 4.875        
cufflinks 6.027     High  
cufflinks 5.644        
cufflinks 7.049        
cufflinks 7.288     High  
cufflinks 3.762       Low
cufflinks 7.89     High  

0 Strain