Gene : Glyma.16G128400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22748:SF4 - DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 Genomic Order:  1284
Name:  ? Glyma.16G128400 Secondary Identifier:  ? PAC:30559507
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G128400 0.5kb upstream 0.5kb upstream 5369 true Chr16: 28049652-28055020 Glycine max
Glyma.16G128400 0.5kb upstream 0.5kb upstream 500 false Chr16: 28054521-28055020 Glycine max
Glyma.16G128400 0.5kb downstream 0.5kb downstream 5369 true Chr16: 28049152-28054520 Glycine max
Glyma.16G128400 0.5kb downstream 0.5kb downstream 500 false Chr16: 28049152-28049651 Glycine max
Glyma.16G128400 1.0kb upstream 1.0kb upstream 5869 true Chr16: 28049652-28055520 Glycine max
Glyma.16G128400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 28054521-28055520 Glycine max
Glyma.16G128400 1.0kb downstream 1.0kb downstream 5869 true Chr16: 28048652-28054520 Glycine max
Glyma.16G128400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 28048652-28049651 Glycine max
Glyma.16G128400 2.0kb upstream 2.0kb upstream 6869 true Chr16: 28049652-28056520 Glycine max
Glyma.16G128400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 28054521-28056520 Glycine max
Glyma.16G128400 2.0kb downstream 2.0kb downstream 6869 true Chr16: 28047652-28054520 Glycine max
Glyma.16G128400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 28047652-28049651 Glycine max
Glyma.16G128400 5.0kb upstream 5.0kb upstream 9869 true Chr16: 28049652-28059520 Glycine max
Glyma.16G128400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 28054521-28059520 Glycine max
Glyma.16G128400 5.0kb downstream 5.0kb downstream 9869 true Chr16: 28044652-28054520 Glycine max
Glyma.16G128400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 28044652-28049651 Glycine max
Glyma.16G128400 10.0kb upstream 10.0kb upstream 14869 true Chr16: 28049652-28064520 Glycine max
Glyma.16G128400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 28054521-28064520 Glycine max
Glyma.16G128400 10.0kb downstream 10.0kb downstream 14869 true Chr16: 28039652-28054520 Glycine max
Glyma.16G128400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 28039652-28049651 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121613357 5273 Angiosperm Singleton cluster - no MSA
122247311 5265 Fabidae Singleton cluster - no MSA
123991102 5270 Rosid Singleton cluster - no MSA
123566079 5271 Pentapetalae Singleton cluster - no MSA
122600840 5272 Eudicot Singleton cluster - no MSA
120885574 5274 Embryophyte Singleton cluster - no MSA
122926357 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.445557 0.0 2.13815    
cufflinks 0.683411 0.0 3.14912    
cufflinks 0.527359 0.0 2.58985    
cufflinks 0.295053 0.0 1.58052    
cufflinks 0.75395 0.0 3.43858    
cufflinks 1.28924 0.0 5.77967   High
cufflinks 0.0651982 0.0 0.486957 Low Low
cufflinks 0.191989 0.0 1.03 Low  
cufflinks 0.515085 0.0 2.85181    
cufflinks 0.167       Low
cufflinks 0.654        
cufflinks 0.814        
cufflinks 0.782        
cufflinks 0.796        
cufflinks 0.389        
cufflinks 0.891        
cufflinks 0.294       Low
cufflinks 0.78        
cufflinks 0.688        
cufflinks 0.951        
cufflinks 0.471        
cufflinks 1.24       High
cufflinks 0.809        
cufflinks 0.905        
cufflinks 0.927        
cufflinks 0.479        

0 Strain