Gene : Glyma.16G029300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33222:SF4 - PROTEIN CURVATURE THYLAKOID 1A, CHLOROPLASTIC Genomic Order:  293
Name:  ? Glyma.16G029300 Secondary Identifier:  ? PAC:30560278
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G029300 0.5kb upstream 0.5kb upstream 3677 true Chr16: 2796473-2800149 Glycine max
Glyma.16G029300 0.5kb upstream 0.5kb upstream 500 false Chr16: 2799650-2800149 Glycine max
Glyma.16G029300 0.5kb downstream 0.5kb downstream 3677 true Chr16: 2795973-2799649 Glycine max
Glyma.16G029300 0.5kb downstream 0.5kb downstream 500 false Chr16: 2795973-2796472 Glycine max
Glyma.16G029300 1.0kb upstream 1.0kb upstream 4177 true Chr16: 2796473-2800649 Glycine max
Glyma.16G029300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2799650-2800649 Glycine max
Glyma.16G029300 1.0kb downstream 1.0kb downstream 4177 true Chr16: 2795473-2799649 Glycine max
Glyma.16G029300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2795473-2796472 Glycine max
Glyma.16G029300 2.0kb upstream 2.0kb upstream 5177 true Chr16: 2796473-2801649 Glycine max
Glyma.16G029300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2799650-2801649 Glycine max
Glyma.16G029300 2.0kb downstream 2.0kb downstream 5177 true Chr16: 2794473-2799649 Glycine max
Glyma.16G029300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2794473-2796472 Glycine max
Glyma.16G029300 5.0kb upstream 5.0kb upstream 8177 true Chr16: 2796473-2804649 Glycine max
Glyma.16G029300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2799650-2804649 Glycine max
Glyma.16G029300 5.0kb downstream 5.0kb downstream 8177 true Chr16: 2791473-2799649 Glycine max
Glyma.16G029300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2791473-2796472 Glycine max
Glyma.16G029300 10.0kb upstream 10.0kb upstream 13177 true Chr16: 2796473-2809649 Glycine max
Glyma.16G029300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2799650-2809649 Glycine max
Glyma.16G029300 10.0kb downstream 10.0kb downstream 13177 true Chr16: 2786473-2799649 Glycine max
Glyma.16G029300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2786473-2796472 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303558 5265 Fabidae View MSA
124073976 5270 Rosid View MSA
123742210 5271 Pentapetalae View MSA
122794719 5272 Eudicot View MSA
122051367 5273 Angiosperm View MSA
121345207 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 188.342 0.0 695.839 High High
cufflinks 202.123 0.0 772.871 High High
cufflinks 56.6768 0.0 190.192 High  
cufflinks 87.2825 0.0 311.251 High  
cufflinks 28.8007 0.0 97.2094 High  
cufflinks 22.2685 0.0 76.6305   Low
cufflinks 113.012 0.0 423.458 High  
cufflinks 94.5464 0.0 343.531 High  
cufflinks 19.8944 0.0 69.3269 High Low
cufflinks 26.821     High  
cufflinks 1.16        
cufflinks 11.008     High  
cufflinks 0.99        
cufflinks 1.087        
cufflinks 1.415        
cufflinks 59.715     High High
cufflinks 0.919       Low
cufflinks 14.016     High  
cufflinks 23.622     High  
cufflinks 67.075     High High
cufflinks 0.869       Low
cufflinks 62.087     High High
cufflinks 57.632     High High
cufflinks 1.128        
cufflinks 68.7     High High
cufflinks 0.682       Low

0 Strain