Gene : Glyma.16G025400 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR10217:SF465 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED Genomic Order:  254
Name:  ? Glyma.16G025400 Secondary Identifier:  ? PAC:30560972
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G025400 0.5kb upstream 0.5kb upstream 8123 true Chr16: 2443212-2451334 Glycine max
Glyma.16G025400 0.5kb upstream 0.5kb upstream 500 false Chr16: 2450835-2451334 Glycine max
Glyma.16G025400 0.5kb downstream 0.5kb downstream 8123 true Chr16: 2442712-2450834 Glycine max
Glyma.16G025400 0.5kb downstream 0.5kb downstream 500 false Chr16: 2442712-2443211 Glycine max
Glyma.16G025400 1.0kb upstream 1.0kb upstream 8623 true Chr16: 2443212-2451834 Glycine max
Glyma.16G025400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2450835-2451834 Glycine max
Glyma.16G025400 1.0kb downstream 1.0kb downstream 8623 true Chr16: 2442212-2450834 Glycine max
Glyma.16G025400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2442212-2443211 Glycine max
Glyma.16G025400 2.0kb upstream 2.0kb upstream 9623 true Chr16: 2443212-2452834 Glycine max
Glyma.16G025400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2450835-2452834 Glycine max
Glyma.16G025400 2.0kb downstream 2.0kb downstream 9623 true Chr16: 2441212-2450834 Glycine max
Glyma.16G025400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2441212-2443211 Glycine max
Glyma.16G025400 5.0kb upstream 5.0kb upstream 12623 true Chr16: 2443212-2455834 Glycine max
Glyma.16G025400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2450835-2455834 Glycine max
Glyma.16G025400 5.0kb downstream 5.0kb downstream 12623 true Chr16: 2438212-2450834 Glycine max
Glyma.16G025400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2438212-2443211 Glycine max
Glyma.16G025400 10.0kb upstream 10.0kb upstream 17623 true Chr16: 2443212-2460834 Glycine max
Glyma.16G025400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2450835-2460834 Glycine max
Glyma.16G025400 10.0kb downstream 10.0kb downstream 17623 true Chr16: 2433212-2450834 Glycine max
Glyma.16G025400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2433212-2443211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782987 5273 Angiosperm View MSA
122247093 5265 Fabidae Singleton cluster - no MSA
123990934 5270 Rosid Singleton cluster - no MSA
123754226 5271 Pentapetalae View MSA
122775617 5272 Eudicot View MSA
121054483 5274 Embryophyte View MSA
123094462 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.02924 0.0 3.48821    
cufflinks 0.115958 0.0 0.449072 Low Low
cufflinks 0.987283 0.0 3.34564    
cufflinks 1.47766 0.0 4.76654   High
cufflinks 0.130603 0.0 0.503526 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.156693 0.0 0.599384 Low  
cufflinks 1.3442 0.0 4.38863   High
cufflinks 0.230069 0.0 0.864352 Low  
cufflinks 0.311        
cufflinks 0.01     Low Low
cufflinks 0.523       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.321        
cufflinks 0.045     Low  
cufflinks 0.443        
cufflinks 0.074     Low  
cufflinks 0.334        
cufflinks 0.008     Low Low
cufflinks 0.511       High
cufflinks 0.204        
cufflinks 0.015     Low  
cufflinks 0.307        
cufflinks 0.025     Low  

0 Strain