Gene : Glyma.15G176400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR14027 - TPR REPEAT NUCLEAR PHOSPHOPROTEIN/CTR9 Genomic Order:  1764
Name:  ? Glyma.15G176400 Secondary Identifier:  ? PAC:30499484
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G176400 0.5kb upstream 0.5kb upstream 25833 true Chr15: 16695207-16721039 Glycine max
Glyma.15G176400 0.5kb upstream 0.5kb upstream 500 false Chr15: 16695207-16695706 Glycine max
Glyma.15G176400 0.5kb downstream 0.5kb downstream 25833 true Chr15: 16695707-16721539 Glycine max
Glyma.15G176400 0.5kb downstream 0.5kb downstream 500 false Chr15: 16721040-16721539 Glycine max
Glyma.15G176400 1.0kb upstream 1.0kb upstream 26333 true Chr15: 16694707-16721039 Glycine max
Glyma.15G176400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 16694707-16695706 Glycine max
Glyma.15G176400 1.0kb downstream 1.0kb downstream 26333 true Chr15: 16695707-16722039 Glycine max
Glyma.15G176400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 16721040-16722039 Glycine max
Glyma.15G176400 2.0kb upstream 2.0kb upstream 27333 true Chr15: 16693707-16721039 Glycine max
Glyma.15G176400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 16693707-16695706 Glycine max
Glyma.15G176400 2.0kb downstream 2.0kb downstream 27333 true Chr15: 16695707-16723039 Glycine max
Glyma.15G176400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 16721040-16723039 Glycine max
Glyma.15G176400 5.0kb upstream 5.0kb upstream 30333 true Chr15: 16690707-16721039 Glycine max
Glyma.15G176400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 16690707-16695706 Glycine max
Glyma.15G176400 5.0kb downstream 5.0kb downstream 30333 true Chr15: 16695707-16726039 Glycine max
Glyma.15G176400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 16721040-16726039 Glycine max
Glyma.15G176400 10.0kb upstream 10.0kb upstream 35333 true Chr15: 16685707-16721039 Glycine max
Glyma.15G176400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 16685707-16695706 Glycine max
Glyma.15G176400 10.0kb downstream 10.0kb downstream 35333 true Chr15: 16695707-16731039 Glycine max
Glyma.15G176400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 16721040-16731039 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300587 5265 Fabidae View MSA
124062991 5270 Rosid View MSA
123749270 5271 Pentapetalae View MSA
122793678 5272 Eudicot View MSA
122044843 5273 Angiosperm View MSA
121346341 5274 Embryophyte View MSA
123426140 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.96383 0.0 20.3567    
cufflinks 6.85005 0.0 23.5569    
cufflinks 6.32577 0.0 21.5575    
cufflinks 6.08643 0.0 20.7502    
cufflinks 4.76264 0.0 16.5693    
cufflinks 3.44514 0.0 12.4608   Low
cufflinks 8.21921 0.0 28.1163   High
cufflinks 4.85261 0.0 16.7921    
cufflinks 6.20427 0.0 21.1521    
cufflinks 0.467        
cufflinks 0.269       Low
cufflinks 0.644        
cufflinks 0.465        
cufflinks 0.461        
cufflinks 0.562        
cufflinks 0.595        
cufflinks 0.383        
cufflinks 0.655        
cufflinks 0.701       High
cufflinks 0.773       High
cufflinks 0.309       Low
cufflinks 0.717       High
cufflinks 0.548        
cufflinks 0.345       Low
cufflinks 0.676        
cufflinks 0.481        

0 Strain