Gene : Glyma.13G339000 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12694 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 Genomic Order:  3390
Name:  ? Glyma.13G339000 Secondary Identifier:  ? PAC:30501623
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G339000 0.5kb upstream 0.5kb upstream 6083 true Chr13: 43126980-43133062 Glycine max
Glyma.13G339000 0.5kb upstream 0.5kb upstream 500 false Chr13: 43132563-43133062 Glycine max
Glyma.13G339000 0.5kb downstream 0.5kb downstream 6083 true Chr13: 43126480-43132562 Glycine max
Glyma.13G339000 0.5kb downstream 0.5kb downstream 500 false Chr13: 43126480-43126979 Glycine max
Glyma.13G339000 1.0kb upstream 1.0kb upstream 6583 true Chr13: 43126980-43133562 Glycine max
Glyma.13G339000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 43132563-43133562 Glycine max
Glyma.13G339000 1.0kb downstream 1.0kb downstream 6583 true Chr13: 43125980-43132562 Glycine max
Glyma.13G339000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 43125980-43126979 Glycine max
Glyma.13G339000 2.0kb upstream 2.0kb upstream 7583 true Chr13: 43126980-43134562 Glycine max
Glyma.13G339000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 43132563-43134562 Glycine max
Glyma.13G339000 2.0kb downstream 2.0kb downstream 7583 true Chr13: 43124980-43132562 Glycine max
Glyma.13G339000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 43124980-43126979 Glycine max
Glyma.13G339000 5.0kb upstream 5.0kb upstream 10583 true Chr13: 43126980-43137562 Glycine max
Glyma.13G339000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 43132563-43137562 Glycine max
Glyma.13G339000 5.0kb downstream 5.0kb downstream 10583 true Chr13: 43121980-43132562 Glycine max
Glyma.13G339000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 43121980-43126979 Glycine max
Glyma.13G339000 10.0kb upstream 10.0kb upstream 15583 true Chr13: 43126980-43142562 Glycine max
Glyma.13G339000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 43132563-43142562 Glycine max
Glyma.13G339000 10.0kb downstream 10.0kb downstream 15583 true Chr13: 43116980-43132562 Glycine max
Glyma.13G339000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 43116980-43126979 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306820 5265 Fabidae View MSA
124063579 5270 Rosid View MSA
123741700 5271 Pentapetalae View MSA
122797200 5272 Eudicot View MSA
122049718 5273 Angiosperm View MSA
121345222 5274 Embryophyte View MSA
123426505 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6112 0.0 40.4178    
cufflinks 11.5306 0.0 40.2392    
cufflinks 10.4971 0.0 36.787   Low
cufflinks 11.4531 0.0 39.848    
cufflinks 11.6779 0.0 40.5743    
cufflinks 13.2675 0.0 45.6219   High
cufflinks 10.6384 0.0 37.3502    
cufflinks 13.8537 0.0 47.5162   High
cufflinks 10.7217 0.0 37.581    
cufflinks 1.975        
cufflinks 1.959        
cufflinks 1.593       Low
cufflinks 2.068        
cufflinks 2.228        
cufflinks 2.284        
cufflinks 2.251        
cufflinks 1.855       Low
cufflinks 1.8       Low
cufflinks 2.19        
cufflinks 2.32        
cufflinks 2.557       High
cufflinks 2.258        
cufflinks 2.341        
cufflinks 2.34        
cufflinks 2.162        
cufflinks 1.996        

0 Strain