Gene : Glyma.13G288200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13270 - PROTEIN C20ORF116-RELATED Genomic Order:  2882
Name:  ? Glyma.13G288200 Secondary Identifier:  ? PAC:30502835
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G288200 0.5kb upstream 0.5kb upstream 5120 true Chr13: 38878311-38883430 Glycine max
Glyma.13G288200 0.5kb upstream 0.5kb upstream 500 false Chr13: 38878311-38878810 Glycine max
Glyma.13G288200 0.5kb downstream 0.5kb downstream 5120 true Chr13: 38878811-38883930 Glycine max
Glyma.13G288200 0.5kb downstream 0.5kb downstream 500 false Chr13: 38883431-38883930 Glycine max
Glyma.13G288200 1.0kb upstream 1.0kb upstream 5620 true Chr13: 38877811-38883430 Glycine max
Glyma.13G288200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 38877811-38878810 Glycine max
Glyma.13G288200 1.0kb downstream 1.0kb downstream 5620 true Chr13: 38878811-38884430 Glycine max
Glyma.13G288200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 38883431-38884430 Glycine max
Glyma.13G288200 2.0kb upstream 2.0kb upstream 6620 true Chr13: 38876811-38883430 Glycine max
Glyma.13G288200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 38876811-38878810 Glycine max
Glyma.13G288200 2.0kb downstream 2.0kb downstream 6620 true Chr13: 38878811-38885430 Glycine max
Glyma.13G288200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 38883431-38885430 Glycine max
Glyma.13G288200 5.0kb upstream 5.0kb upstream 9620 true Chr13: 38873811-38883430 Glycine max
Glyma.13G288200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 38873811-38878810 Glycine max
Glyma.13G288200 5.0kb downstream 5.0kb downstream 9620 true Chr13: 38878811-38888430 Glycine max
Glyma.13G288200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 38883431-38888430 Glycine max
Glyma.13G288200 10.0kb upstream 10.0kb upstream 14620 true Chr13: 38868811-38883430 Glycine max
Glyma.13G288200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 38868811-38878810 Glycine max
Glyma.13G288200 10.0kb downstream 10.0kb downstream 14620 true Chr13: 38878811-38893430 Glycine max
Glyma.13G288200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 38883431-38893430 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299765 5265 Fabidae View MSA
124064342 5270 Rosid View MSA
123740748 5271 Pentapetalae View MSA
122787568 5272 Eudicot View MSA
122042845 5273 Angiosperm View MSA
121345530 5274 Embryophyte View MSA
123425622 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.31087 0.0 25.7412    
cufflinks 8.41007 0.0 23.507   Low
cufflinks 10.3914 0.0 28.5139    
cufflinks 11.9543 0.0 32.4514    
cufflinks 9.9447 0.0 27.2894    
cufflinks 11.615 0.0 31.5966    
cufflinks 16.9616 0.0 45.3825   High
cufflinks 11.1376 0.0 30.3959    
cufflinks 10.3888 0.0 28.4905    
cufflinks 2.541        
cufflinks 4.358       High
cufflinks 3.308        
cufflinks 2.617        
cufflinks 3.174        
cufflinks 3.011        
cufflinks 2.149       Low
cufflinks 2.395        
cufflinks 3.052        
cufflinks 2.935        
cufflinks 2.172        
cufflinks 4.06       High
cufflinks 2.369        
cufflinks 1.728       Low
cufflinks 4.868       High
cufflinks 2.222        
cufflinks 3.928       High

0 Strain