Gene : Glyma.13G172100 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR18966//PTHR18966:SF233 - IONOTROPIC GLUTAMATE RECEPTOR Genomic Order:  1721
Name:  ? Glyma.13G172100 Secondary Identifier:  ? PAC:30504978
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G172100 0.5kb upstream 0.5kb upstream 4586 true Chr13: 28607695-28612280 Glycine max
Glyma.13G172100 0.5kb upstream 0.5kb upstream 500 false Chr13: 28607695-28608194 Glycine max
Glyma.13G172100 0.5kb downstream 0.5kb downstream 4586 true Chr13: 28608195-28612780 Glycine max
Glyma.13G172100 0.5kb downstream 0.5kb downstream 500 false Chr13: 28612281-28612780 Glycine max
Glyma.13G172100 1.0kb upstream 1.0kb upstream 5086 true Chr13: 28607195-28612280 Glycine max
Glyma.13G172100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 28607195-28608194 Glycine max
Glyma.13G172100 1.0kb downstream 1.0kb downstream 5086 true Chr13: 28608195-28613280 Glycine max
Glyma.13G172100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 28612281-28613280 Glycine max
Glyma.13G172100 2.0kb upstream 2.0kb upstream 6086 true Chr13: 28606195-28612280 Glycine max
Glyma.13G172100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 28606195-28608194 Glycine max
Glyma.13G172100 2.0kb downstream 2.0kb downstream 6086 true Chr13: 28608195-28614280 Glycine max
Glyma.13G172100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 28612281-28614280 Glycine max
Glyma.13G172100 5.0kb upstream 5.0kb upstream 9086 true Chr13: 28603195-28612280 Glycine max
Glyma.13G172100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 28603195-28608194 Glycine max
Glyma.13G172100 5.0kb downstream 5.0kb downstream 9086 true Chr13: 28608195-28617280 Glycine max
Glyma.13G172100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 28612281-28617280 Glycine max
Glyma.13G172100 10.0kb upstream 10.0kb upstream 14086 true Chr13: 28598195-28612280 Glycine max
Glyma.13G172100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 28598195-28608194 Glycine max
Glyma.13G172100 10.0kb downstream 10.0kb downstream 14086 true Chr13: 28608195-28622280 Glycine max
Glyma.13G172100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 28612281-28622280 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031905 5273 Angiosperm View MSA
122245797 5265 Fabidae Singleton cluster - no MSA
124042725 5270 Rosid View MSA
123612903 5271 Pentapetalae View MSA
122647382 5272 Eudicot View MSA
121300866 5274 Embryophyte View MSA
123338579 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.858954 0.0 2.94818   High
cufflinks 0.851314 0.0 2.923   High
cufflinks 0.088114 0.0 0.343899 Low  
cufflinks 0.0768827 0.0 0.301782 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0838823 0.0 0.328311 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.316536 0.0 1.16689    
cufflinks 0.00749645 0.0 0.0339064 Low Low
cufflinks 0.271        
cufflinks 0.009     Low Low
cufflinks 0.05     Low  
cufflinks 0.008     Low Low
cufflinks 0.006     Low Low
cufflinks 0.009     Low Low
cufflinks 1.161       High
cufflinks 0.041     Low  
cufflinks 0.036     Low  
cufflinks 1.879       High
cufflinks 1.212       High
cufflinks 0.016     Low  
cufflinks 1.631       High
cufflinks 1.297       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.058       High
cufflinks 0.011     Low  

0 Strain