Gene : Glyma.12G234500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10791//PTHR10791:SF57 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  2345
Name:  ? Glyma.12G234500 Secondary Identifier:  ? PAC:30546073
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G234500 0.5kb upstream 0.5kb upstream 1904 true Chr12: 39393558-39395461 Glycine max
Glyma.12G234500 0.5kb upstream 0.5kb upstream 500 false Chr12: 39393558-39394057 Glycine max
Glyma.12G234500 0.5kb downstream 0.5kb downstream 1904 true Chr12: 39394058-39395961 Glycine max
Glyma.12G234500 0.5kb downstream 0.5kb downstream 500 false Chr12: 39395462-39395961 Glycine max
Glyma.12G234500 1.0kb upstream 1.0kb upstream 2404 true Chr12: 39393058-39395461 Glycine max
Glyma.12G234500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39393058-39394057 Glycine max
Glyma.12G234500 1.0kb downstream 1.0kb downstream 2404 true Chr12: 39394058-39396461 Glycine max
Glyma.12G234500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39395462-39396461 Glycine max
Glyma.12G234500 2.0kb upstream 2.0kb upstream 3404 true Chr12: 39392058-39395461 Glycine max
Glyma.12G234500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39392058-39394057 Glycine max
Glyma.12G234500 2.0kb downstream 2.0kb downstream 3404 true Chr12: 39394058-39397461 Glycine max
Glyma.12G234500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39395462-39397461 Glycine max
Glyma.12G234500 5.0kb upstream 5.0kb upstream 6404 true Chr12: 39389058-39395461 Glycine max
Glyma.12G234500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39389058-39394057 Glycine max
Glyma.12G234500 5.0kb downstream 5.0kb downstream 6404 true Chr12: 39394058-39400461 Glycine max
Glyma.12G234500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39395462-39400461 Glycine max
Glyma.12G234500 10.0kb upstream 10.0kb upstream 11404 true Chr12: 39384058-39395461 Glycine max
Glyma.12G234500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39384058-39394057 Glycine max
Glyma.12G234500 10.0kb downstream 10.0kb downstream 11404 true Chr12: 39394058-39405461 Glycine max
Glyma.12G234500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39395462-39405461 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311090 5265 Fabidae View MSA
124072962 5270 Rosid View MSA
123749486 5271 Pentapetalae View MSA
122796562 5272 Eudicot View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.1119 0.0 115.203 High  
cufflinks 2.53575 0.0 9.04196    
cufflinks 189.96 0.0 560.914 High High
cufflinks 1.53775 0.0 5.65812   Low
cufflinks 4.69257 0.0 15.8409    
cufflinks 81.4762 0.0 219.927 High High
cufflinks 3.85883 0.0 13.3185    
cufflinks 1.82692 0.0 6.65777    
cufflinks 7.443 0.0 23.5353    
cufflinks 2.185       Low
cufflinks 307.688     High High
cufflinks 51.553     High  
cufflinks 13.044     High  
cufflinks 10.309     High  
cufflinks 30.769     High  
cufflinks 6.62        
cufflinks 3.841        
cufflinks 2.451       Low
cufflinks 2.167       Low
cufflinks 5.296        
cufflinks 81.449     High High
cufflinks 5.244        
cufflinks 5.049        
cufflinks 235.062     High High
cufflinks 9.688     High  
cufflinks 103.486     High High

0 Strain