Gene : Glyma.12G181400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Genomic Order:  1814
Name:  ? Glyma.12G181400 Secondary Identifier:  ? PAC:30546231
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G181400 0.5kb upstream 0.5kb upstream 3947 true Chr12: 34193664-34197610 Glycine max
Glyma.12G181400 0.5kb upstream 0.5kb upstream 500 false Chr12: 34197111-34197610 Glycine max
Glyma.12G181400 0.5kb downstream 0.5kb downstream 3947 true Chr12: 34193164-34197110 Glycine max
Glyma.12G181400 0.5kb downstream 0.5kb downstream 500 false Chr12: 34193164-34193663 Glycine max
Glyma.12G181400 1.0kb upstream 1.0kb upstream 4447 true Chr12: 34193664-34198110 Glycine max
Glyma.12G181400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 34197111-34198110 Glycine max
Glyma.12G181400 1.0kb downstream 1.0kb downstream 4447 true Chr12: 34192664-34197110 Glycine max
Glyma.12G181400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 34192664-34193663 Glycine max
Glyma.12G181400 2.0kb upstream 2.0kb upstream 5447 true Chr12: 34193664-34199110 Glycine max
Glyma.12G181400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 34197111-34199110 Glycine max
Glyma.12G181400 2.0kb downstream 2.0kb downstream 5447 true Chr12: 34191664-34197110 Glycine max
Glyma.12G181400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 34191664-34193663 Glycine max
Glyma.12G181400 5.0kb upstream 5.0kb upstream 8447 true Chr12: 34193664-34202110 Glycine max
Glyma.12G181400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 34197111-34202110 Glycine max
Glyma.12G181400 5.0kb downstream 5.0kb downstream 8447 true Chr12: 34188664-34197110 Glycine max
Glyma.12G181400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 34188664-34193663 Glycine max
Glyma.12G181400 10.0kb upstream 10.0kb upstream 13447 true Chr12: 34193664-34207110 Glycine max
Glyma.12G181400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 34197111-34207110 Glycine max
Glyma.12G181400 10.0kb downstream 10.0kb downstream 13447 true Chr12: 34183664-34197110 Glycine max
Glyma.12G181400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 34183664-34193663 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313327 5265 Fabidae View MSA
124068201 5270 Rosid View MSA
123749750 5271 Pentapetalae View MSA
122797243 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.8771 0.0 115.567 High  
cufflinks 36.5899 0.0 100.007 High  
cufflinks 16.8813 0.0 45.0581   Low
cufflinks 37.3862 0.0 102.418 High  
cufflinks 69.8867 0.0 204.444 High High
cufflinks 41.5816 0.0 114.641 High  
cufflinks 89.6173 0.0 272.043 High High
cufflinks 34.8535 0.0 95.0876 High  
cufflinks 42.2848 0.0 116.939 High  
cufflinks 14.817     High  
cufflinks 3.847       Low
cufflinks 20.74     High  
cufflinks 49.671     High High
cufflinks 74.167     High High
cufflinks 5.427     High  
cufflinks 10.061     High  
cufflinks 10.7     High  
cufflinks 17.603     High  
cufflinks 21.27     High  
cufflinks 5.927        
cufflinks 6.685     High  
cufflinks 7.088        
cufflinks 15.19     High  
cufflinks 4.707       Low
cufflinks 8.52     High  
cufflinks 9.763     High  

0 Strain