Gene : Glyma.12G169900 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  1699
Name:  ? Glyma.12G169900 Secondary Identifier:  ? PAC:30548267
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6890 Glycine max pathologic  
Gmax PWY-6908 Glycine max pathologic  
Gmax PWY-6910 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G169900 0.5kb upstream 0.5kb upstream 5327 true Chr12: 32466147-32471473 Glycine max
Glyma.12G169900 0.5kb upstream 0.5kb upstream 500 false Chr12: 32470974-32471473 Glycine max
Glyma.12G169900 0.5kb downstream 0.5kb downstream 5327 true Chr12: 32465647-32470973 Glycine max
Glyma.12G169900 0.5kb downstream 0.5kb downstream 500 false Chr12: 32465647-32466146 Glycine max
Glyma.12G169900 1.0kb upstream 1.0kb upstream 5827 true Chr12: 32466147-32471973 Glycine max
Glyma.12G169900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 32470974-32471973 Glycine max
Glyma.12G169900 1.0kb downstream 1.0kb downstream 5827 true Chr12: 32465147-32470973 Glycine max
Glyma.12G169900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 32465147-32466146 Glycine max
Glyma.12G169900 2.0kb upstream 2.0kb upstream 6827 true Chr12: 32466147-32472973 Glycine max
Glyma.12G169900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 32470974-32472973 Glycine max
Glyma.12G169900 2.0kb downstream 2.0kb downstream 6827 true Chr12: 32464147-32470973 Glycine max
Glyma.12G169900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 32464147-32466146 Glycine max
Glyma.12G169900 5.0kb upstream 5.0kb upstream 9827 true Chr12: 32466147-32475973 Glycine max
Glyma.12G169900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 32470974-32475973 Glycine max
Glyma.12G169900 5.0kb downstream 5.0kb downstream 9827 true Chr12: 32461147-32470973 Glycine max
Glyma.12G169900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 32461147-32466146 Glycine max
Glyma.12G169900 10.0kb upstream 10.0kb upstream 14827 true Chr12: 32466147-32480973 Glycine max
Glyma.12G169900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 32470974-32480973 Glycine max
Glyma.12G169900 10.0kb downstream 10.0kb downstream 14827 true Chr12: 32456147-32470973 Glycine max
Glyma.12G169900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 32456147-32466146 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309007 5265 Fabidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.30639 0.0 8.43424   High
cufflinks 0.640342 0.0 5.62399    
cufflinks 0.437695 0.0 4.73082   Low
cufflinks 0.769858 0.0 9.1986    
cufflinks 0.57949 0.0 5.16267    
cufflinks 0.39026 0.0 3.88352   Low
cufflinks 0.55493 0.0 9.14868    
cufflinks 0.851184 0.0 9.5453    
cufflinks 0.630776 0.0 5.9604    
cufflinks 0.306        
cufflinks 0.047     Low Low
cufflinks 0.334        
cufflinks 0.327        
cufflinks 0.531        
cufflinks 0.084       Low
cufflinks 0.592        
cufflinks 0.131        
cufflinks 0.378        
cufflinks 0.481        
cufflinks 0.576        
cufflinks 0.085       Low
cufflinks 0.584        
cufflinks 0.903       High
cufflinks 0.069       Low
cufflinks 0.552        
cufflinks 0.195        

0 Strain