Gene : Glyma.12G115200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR16517:SF31 - TUBBY-LIKE F-BOX PROTEIN 1-RELATED Genomic Order:  1152
Name:  ? Glyma.12G115200 Secondary Identifier:  ? PAC:30545583
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G115200 0.5kb upstream 0.5kb upstream 2355 true Chr12: 11504380-11506734 Glycine max
Glyma.12G115200 0.5kb upstream 0.5kb upstream 500 false Chr12: 11506235-11506734 Glycine max
Glyma.12G115200 0.5kb downstream 0.5kb downstream 2355 true Chr12: 11503880-11506234 Glycine max
Glyma.12G115200 0.5kb downstream 0.5kb downstream 500 false Chr12: 11503880-11504379 Glycine max
Glyma.12G115200 1.0kb upstream 1.0kb upstream 2855 true Chr12: 11504380-11507234 Glycine max
Glyma.12G115200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 11506235-11507234 Glycine max
Glyma.12G115200 1.0kb downstream 1.0kb downstream 2855 true Chr12: 11503380-11506234 Glycine max
Glyma.12G115200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 11503380-11504379 Glycine max
Glyma.12G115200 2.0kb upstream 2.0kb upstream 3855 true Chr12: 11504380-11508234 Glycine max
Glyma.12G115200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 11506235-11508234 Glycine max
Glyma.12G115200 2.0kb downstream 2.0kb downstream 3855 true Chr12: 11502380-11506234 Glycine max
Glyma.12G115200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 11502380-11504379 Glycine max
Glyma.12G115200 5.0kb upstream 5.0kb upstream 6855 true Chr12: 11504380-11511234 Glycine max
Glyma.12G115200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 11506235-11511234 Glycine max
Glyma.12G115200 5.0kb downstream 5.0kb downstream 6855 true Chr12: 11499380-11506234 Glycine max
Glyma.12G115200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 11499380-11504379 Glycine max
Glyma.12G115200 10.0kb upstream 10.0kb upstream 11855 true Chr12: 11504380-11516234 Glycine max
Glyma.12G115200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 11506235-11516234 Glycine max
Glyma.12G115200 10.0kb downstream 10.0kb downstream 11855 true Chr12: 11494380-11506234 Glycine max
Glyma.12G115200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 11494380-11504379 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121611690 5273 Angiosperm Singleton cluster - no MSA
122244923 5265 Fabidae Singleton cluster - no MSA
123989150 5270 Rosid Singleton cluster - no MSA
123564279 5271 Pentapetalae Singleton cluster - no MSA
122599049 5272 Eudicot Singleton cluster - no MSA
120883918 5274 Embryophyte Singleton cluster - no MSA
122924730 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16898 0.0 0.67648 Low  
cufflinks 0.0533631 0.0 0.227931 Low  
cufflinks 0.141646 0.0 0.56962 Low  
cufflinks 0.0619875 0.0 0.261522 Low  
cufflinks 3.3444E-4 0.0 0.00625792 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.106635 0.0 0.435867 Low  
cufflinks 0.0314043 0.0 0.139942 Low  
cufflinks 0.0840885 0.0 0.347639 Low  
cufflinks 0.031     Low Low
cufflinks 0.113        
cufflinks 0.015     Low Low
cufflinks 0.1        
cufflinks 0.033     Low Low
cufflinks 0.072        
cufflinks 0.031     Low Low
cufflinks 0.043     Low  
cufflinks 0.075     Low  
cufflinks 0.071     Low  
cufflinks 0.048     Low  
cufflinks 0.14       High
cufflinks 0.082     Low  
cufflinks 0.059     Low  
cufflinks 0.092        
cufflinks 0.123       High
cufflinks 0.097        

0 Strain