Gene : Glyma.12G043400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10996//PTHR10996:SF162 - 2-HYDROXYACID DEHYDROGENASE-RELATED Genomic Order:  434
Name:  ? Glyma.12G043400 Secondary Identifier:  ? PAC:30547273
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G043400 0.5kb upstream 0.5kb upstream 4381 true Chr12: 3143230-3147610 Glycine max
Glyma.12G043400 0.5kb upstream 0.5kb upstream 500 false Chr12: 3143230-3143729 Glycine max
Glyma.12G043400 0.5kb downstream 0.5kb downstream 4381 true Chr12: 3143730-3148110 Glycine max
Glyma.12G043400 0.5kb downstream 0.5kb downstream 500 false Chr12: 3147611-3148110 Glycine max
Glyma.12G043400 1.0kb upstream 1.0kb upstream 4881 true Chr12: 3142730-3147610 Glycine max
Glyma.12G043400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3142730-3143729 Glycine max
Glyma.12G043400 1.0kb downstream 1.0kb downstream 4881 true Chr12: 3143730-3148610 Glycine max
Glyma.12G043400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3147611-3148610 Glycine max
Glyma.12G043400 2.0kb upstream 2.0kb upstream 5881 true Chr12: 3141730-3147610 Glycine max
Glyma.12G043400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3141730-3143729 Glycine max
Glyma.12G043400 2.0kb downstream 2.0kb downstream 5881 true Chr12: 3143730-3149610 Glycine max
Glyma.12G043400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3147611-3149610 Glycine max
Glyma.12G043400 5.0kb upstream 5.0kb upstream 8881 true Chr12: 3138730-3147610 Glycine max
Glyma.12G043400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3138730-3143729 Glycine max
Glyma.12G043400 5.0kb downstream 5.0kb downstream 8881 true Chr12: 3143730-3152610 Glycine max
Glyma.12G043400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3147611-3152610 Glycine max
Glyma.12G043400 10.0kb upstream 10.0kb upstream 13881 true Chr12: 3133730-3147610 Glycine max
Glyma.12G043400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3133730-3143729 Glycine max
Glyma.12G043400 10.0kb downstream 10.0kb downstream 13881 true Chr12: 3143730-3157610 Glycine max
Glyma.12G043400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3147611-3157610 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304259 5265 Fabidae View MSA
124070467 5270 Rosid View MSA
123747475 5271 Pentapetalae View MSA
122790388 5272 Eudicot View MSA
122043095 5273 Angiosperm View MSA
121348268 5274 Embryophyte View MSA
123380800 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9316 0.0 42.8295    
cufflinks 11.1456 0.0 41.3513    
cufflinks 25.7321 0.0 95.9054 High High
cufflinks 11.5864 0.0 43.5422    
cufflinks 10.3137 0.0 38.9941    
cufflinks 5.65831 0.0 23.9033   Low
cufflinks 19.6101 0.0 67.1721   High
cufflinks 10.7409 0.0 40.6232    
cufflinks 11.9216 0.0 43.4133    
cufflinks 1.541        
cufflinks 1.898        
cufflinks 4.985       High
cufflinks 1.15        
cufflinks 1.338        
cufflinks 2.415        
cufflinks 3.243        
cufflinks 0.602       Low
cufflinks 4.286       High
cufflinks 1.898        
cufflinks 5.789       High
cufflinks 1.183        
cufflinks 4.181       High
cufflinks 1.969        
cufflinks 1.933        
cufflinks 4.503       High
cufflinks 0.769       Low

0 Strain