Gene : Glyma.12G012400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11089:SF43 - NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  124
Name:  ? Glyma.12G012400 Secondary Identifier:  ? PAC:30548772
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6845 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G012400 0.5kb upstream 0.5kb upstream 6313 true Chr12: 904135-910447 Glycine max
Glyma.12G012400 0.5kb upstream 0.5kb upstream 500 false Chr12: 909948-910447 Glycine max
Glyma.12G012400 0.5kb downstream 0.5kb downstream 6313 true Chr12: 903635-909947 Glycine max
Glyma.12G012400 0.5kb downstream 0.5kb downstream 500 false Chr12: 903635-904134 Glycine max
Glyma.12G012400 1.0kb upstream 1.0kb upstream 6813 true Chr12: 904135-910947 Glycine max
Glyma.12G012400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 909948-910947 Glycine max
Glyma.12G012400 1.0kb downstream 1.0kb downstream 6813 true Chr12: 903135-909947 Glycine max
Glyma.12G012400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 903135-904134 Glycine max
Glyma.12G012400 2.0kb upstream 2.0kb upstream 7813 true Chr12: 904135-911947 Glycine max
Glyma.12G012400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 909948-911947 Glycine max
Glyma.12G012400 2.0kb downstream 2.0kb downstream 7813 true Chr12: 902135-909947 Glycine max
Glyma.12G012400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 902135-904134 Glycine max
Glyma.12G012400 5.0kb upstream 5.0kb upstream 10813 true Chr12: 904135-914947 Glycine max
Glyma.12G012400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 909948-914947 Glycine max
Glyma.12G012400 5.0kb downstream 5.0kb downstream 10813 true Chr12: 899135-909947 Glycine max
Glyma.12G012400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 899135-904134 Glycine max
Glyma.12G012400 10.0kb upstream 10.0kb upstream 15813 true Chr12: 904135-919947 Glycine max
Glyma.12G012400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 909948-919947 Glycine max
Glyma.12G012400 10.0kb downstream 10.0kb downstream 15813 true Chr12: 894135-909947 Glycine max
Glyma.12G012400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 894135-904134 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306553 5265 Fabidae View MSA
124065366 5270 Rosid View MSA
123739170 5271 Pentapetalae View MSA
122792557 5272 Eudicot View MSA
122045244 5273 Angiosperm View MSA
121346425 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.01303 0.0 28.4499   High
cufflinks 3.113 0.0 18.1402    
cufflinks 1.41961 0.0 9.47197    
cufflinks 2.12177 0.0 14.1614    
cufflinks 1.28183 0.0 10.2086    
cufflinks 0.632751 0.0 3.69025   Low
cufflinks 2.82968 0.0 15.5943    
cufflinks 1.63101 0.0 9.13608    
cufflinks 1.38555 0.0 11.0271    
cufflinks 0.104       Low
cufflinks 0.214        
cufflinks 0.198        
cufflinks 0.064     Low Low
cufflinks 0.08       Low
cufflinks 0.225        
cufflinks 0.365       High
cufflinks 0.087       Low
cufflinks 0.21        
cufflinks 0.286        
cufflinks 0.31        
cufflinks 0.163        
cufflinks 0.306        
cufflinks 0.481       High
cufflinks 0.188        
cufflinks 0.38       High
cufflinks 0.136        

0 Strain