Gene : Glyma.09G178200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34056:SF1 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MRC8 Genomic Order:  1782
Name:  ? Glyma.09G178200 Secondary Identifier:  ? PAC:30486725
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G178200 0.5kb upstream 0.5kb upstream 3764 true Chr09: 40304568-40308331 Glycine max
Glyma.09G178200 0.5kb upstream 0.5kb upstream 500 false Chr09: 40307832-40308331 Glycine max
Glyma.09G178200 0.5kb downstream 0.5kb downstream 3764 true Chr09: 40304068-40307831 Glycine max
Glyma.09G178200 0.5kb downstream 0.5kb downstream 500 false Chr09: 40304068-40304567 Glycine max
Glyma.09G178200 1.0kb upstream 1.0kb upstream 4264 true Chr09: 40304568-40308831 Glycine max
Glyma.09G178200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 40307832-40308831 Glycine max
Glyma.09G178200 1.0kb downstream 1.0kb downstream 4264 true Chr09: 40303568-40307831 Glycine max
Glyma.09G178200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 40303568-40304567 Glycine max
Glyma.09G178200 2.0kb upstream 2.0kb upstream 5264 true Chr09: 40304568-40309831 Glycine max
Glyma.09G178200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 40307832-40309831 Glycine max
Glyma.09G178200 2.0kb downstream 2.0kb downstream 5264 true Chr09: 40302568-40307831 Glycine max
Glyma.09G178200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 40302568-40304567 Glycine max
Glyma.09G178200 5.0kb upstream 5.0kb upstream 8264 true Chr09: 40304568-40312831 Glycine max
Glyma.09G178200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 40307832-40312831 Glycine max
Glyma.09G178200 5.0kb downstream 5.0kb downstream 8264 true Chr09: 40299568-40307831 Glycine max
Glyma.09G178200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 40299568-40304567 Glycine max
Glyma.09G178200 10.0kb upstream 10.0kb upstream 13264 true Chr09: 40304568-40317831 Glycine max
Glyma.09G178200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 40307832-40317831 Glycine max
Glyma.09G178200 10.0kb downstream 10.0kb downstream 13264 true Chr09: 40294568-40307831 Glycine max
Glyma.09G178200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 40294568-40304567 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310644 5265 Fabidae View MSA
124067453 5270 Rosid View MSA
123740304 5271 Pentapetalae View MSA
122789532 5272 Eudicot View MSA
122043438 5273 Angiosperm View MSA
121310125 5274 Embryophyte View MSA
123347699 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.494145 0.0 1.83164   Low
cufflinks 6.74608 0.0 18.969   High
cufflinks 0.931892 0.0 3.31604    
cufflinks 2.51406 0.0 8.04402    
cufflinks 3.54672 0.0 10.8343    
cufflinks 1.36832 0.0 4.72803    
cufflinks 14.4594 0.0 38.714   High
cufflinks 1.75076 0.0 5.86724    
cufflinks 2.48528 0.0 7.9639    
cufflinks 0.682        
cufflinks 0.283       Low
cufflinks 1.318        
cufflinks 1.852        
cufflinks 2.569        
cufflinks 0.097       Low
cufflinks 2.419        
cufflinks 0.197       Low
cufflinks 1.654        
cufflinks 3.741       High
cufflinks 2.211        
cufflinks 0.411        
cufflinks 2.586        
cufflinks 3.558       High
cufflinks 0.526        
cufflinks 1.839        
cufflinks 0.286       Low

0 Strain