Gene : Glyma.09G143600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24128:SF13 - E3 UBIQUITIN-PROTEIN LIGASE XBAT33 Genomic Order:  1436
Name:  ? Glyma.09G143600 Secondary Identifier:  ? PAC:30483146
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G143600 0.5kb upstream 0.5kb upstream 7799 true Chr09: 35656881-35664679 Glycine max
Glyma.09G143600 0.5kb upstream 0.5kb upstream 500 false Chr09: 35664180-35664679 Glycine max
Glyma.09G143600 0.5kb downstream 0.5kb downstream 7799 true Chr09: 35656381-35664179 Glycine max
Glyma.09G143600 0.5kb downstream 0.5kb downstream 500 false Chr09: 35656381-35656880 Glycine max
Glyma.09G143600 1.0kb upstream 1.0kb upstream 8299 true Chr09: 35656881-35665179 Glycine max
Glyma.09G143600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 35664180-35665179 Glycine max
Glyma.09G143600 1.0kb downstream 1.0kb downstream 8299 true Chr09: 35655881-35664179 Glycine max
Glyma.09G143600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 35655881-35656880 Glycine max
Glyma.09G143600 2.0kb upstream 2.0kb upstream 9299 true Chr09: 35656881-35666179 Glycine max
Glyma.09G143600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 35664180-35666179 Glycine max
Glyma.09G143600 2.0kb downstream 2.0kb downstream 9299 true Chr09: 35654881-35664179 Glycine max
Glyma.09G143600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 35654881-35656880 Glycine max
Glyma.09G143600 5.0kb upstream 5.0kb upstream 12299 true Chr09: 35656881-35669179 Glycine max
Glyma.09G143600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 35664180-35669179 Glycine max
Glyma.09G143600 5.0kb downstream 5.0kb downstream 12299 true Chr09: 35651881-35664179 Glycine max
Glyma.09G143600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 35651881-35656880 Glycine max
Glyma.09G143600 10.0kb upstream 10.0kb upstream 17299 true Chr09: 35656881-35674179 Glycine max
Glyma.09G143600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35664180-35674179 Glycine max
Glyma.09G143600 10.0kb downstream 10.0kb downstream 17299 true Chr09: 35646881-35664179 Glycine max
Glyma.09G143600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 35646881-35656880 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311644 5265 Fabidae View MSA
124061674 5270 Rosid View MSA
123746531 5271 Pentapetalae View MSA
122792004 5272 Eudicot View MSA
122042206 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348775 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.752696 0.0 3.27322   Low
cufflinks 3.64346 0.0 13.1316    
cufflinks 4.95317 0.0 16.4708    
cufflinks 4.70175 0.0 15.861    
cufflinks 9.48567 0.0 28.6423    
cufflinks 6.58801 0.0 23.9536    
cufflinks 3.86053 0.0 13.7536    
cufflinks 9.37086 0.0 28.379    
cufflinks 8.68452 0.0 26.4136    
cufflinks 0.492        
cufflinks 0.801        
cufflinks 0.737        
cufflinks 0.687        
cufflinks 0.604        
cufflinks 0.203       Low
cufflinks 0.404        
cufflinks 0.509        
cufflinks 0.524        
cufflinks 0.7        
cufflinks 0.323        
cufflinks 2.217       High
cufflinks 0.359        
cufflinks 0.506        
cufflinks 1.09        
cufflinks 0.316        
cufflinks 2.964       High

0 Strain