Gene : Glyma.08G288900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13833:SF46 - NHL DOMAIN-CONTAINING PROTEIN Genomic Order:  2889
Name:  ? Glyma.08G288900 Secondary Identifier:  ? PAC:30536462
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G288900 0.5kb upstream 0.5kb upstream 4862 true Chr08: 40148172-40153033 Glycine max
Glyma.08G288900 0.5kb upstream 0.5kb upstream 500 false Chr08: 40152534-40153033 Glycine max
Glyma.08G288900 0.5kb downstream 0.5kb downstream 4862 true Chr08: 40147672-40152533 Glycine max
Glyma.08G288900 0.5kb downstream 0.5kb downstream 500 false Chr08: 40147672-40148171 Glycine max
Glyma.08G288900 1.0kb upstream 1.0kb upstream 5362 true Chr08: 40148172-40153533 Glycine max
Glyma.08G288900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40152534-40153533 Glycine max
Glyma.08G288900 1.0kb downstream 1.0kb downstream 5362 true Chr08: 40147172-40152533 Glycine max
Glyma.08G288900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40147172-40148171 Glycine max
Glyma.08G288900 2.0kb upstream 2.0kb upstream 6362 true Chr08: 40148172-40154533 Glycine max
Glyma.08G288900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40152534-40154533 Glycine max
Glyma.08G288900 2.0kb downstream 2.0kb downstream 6362 true Chr08: 40146172-40152533 Glycine max
Glyma.08G288900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40146172-40148171 Glycine max
Glyma.08G288900 5.0kb upstream 5.0kb upstream 9362 true Chr08: 40148172-40157533 Glycine max
Glyma.08G288900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40152534-40157533 Glycine max
Glyma.08G288900 5.0kb downstream 5.0kb downstream 9362 true Chr08: 40143172-40152533 Glycine max
Glyma.08G288900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40143172-40148171 Glycine max
Glyma.08G288900 10.0kb upstream 10.0kb upstream 14362 true Chr08: 40148172-40162533 Glycine max
Glyma.08G288900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40152534-40162533 Glycine max
Glyma.08G288900 10.0kb downstream 10.0kb downstream 14362 true Chr08: 40138172-40152533 Glycine max
Glyma.08G288900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40138172-40148171 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308111 5265 Fabidae View MSA
124064116 5270 Rosid View MSA
123736786 5271 Pentapetalae View MSA
122791919 5272 Eudicot View MSA
122050067 5273 Angiosperm View MSA
121350003 5274 Embryophyte View MSA
123381537 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.1154 0.0 7.68277   Low
cufflinks 13.564 0.0 52.659    
cufflinks 5.2895 0.0 22.5771    
cufflinks 4.40858 0.0 20.0468    
cufflinks 12.1629 0.0 48.25    
cufflinks 5.53938 0.0 23.4827    
cufflinks 8.67758 0.0 36.9064    
cufflinks 6.79441 0.0 26.9394    
cufflinks 19.0114 0.0 72.338   High
cufflinks 0.744        
cufflinks 0.487       Low
cufflinks 1.015        
cufflinks 1.945       High
cufflinks 1.594       High
cufflinks 0.803        
cufflinks 0.544        
cufflinks 0.662        
cufflinks 1.318       High
cufflinks 1.772       High
cufflinks 0.628        
cufflinks 0.629        
cufflinks 0.701        
cufflinks 0.586        
cufflinks 0.605        
cufflinks 0.503       Low
cufflinks 1.091        

0 Strain