Gene : Glyma.08G102900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1029
Name:  ? Glyma.08G102900 Secondary Identifier:  ? PAC:30539250
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G102900 0.5kb upstream 0.5kb upstream 5665 true Chr08: 7886865-7892529 Glycine max
Glyma.08G102900 0.5kb upstream 0.5kb upstream 500 false Chr08: 7892030-7892529 Glycine max
Glyma.08G102900 0.5kb downstream 0.5kb downstream 5665 true Chr08: 7886365-7892029 Glycine max
Glyma.08G102900 0.5kb downstream 0.5kb downstream 500 false Chr08: 7886365-7886864 Glycine max
Glyma.08G102900 1.0kb upstream 1.0kb upstream 6165 true Chr08: 7886865-7893029 Glycine max
Glyma.08G102900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7892030-7893029 Glycine max
Glyma.08G102900 1.0kb downstream 1.0kb downstream 6165 true Chr08: 7885865-7892029 Glycine max
Glyma.08G102900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7885865-7886864 Glycine max
Glyma.08G102900 2.0kb upstream 2.0kb upstream 7165 true Chr08: 7886865-7894029 Glycine max
Glyma.08G102900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7892030-7894029 Glycine max
Glyma.08G102900 2.0kb downstream 2.0kb downstream 7165 true Chr08: 7884865-7892029 Glycine max
Glyma.08G102900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7884865-7886864 Glycine max
Glyma.08G102900 5.0kb upstream 5.0kb upstream 10165 true Chr08: 7886865-7897029 Glycine max
Glyma.08G102900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7892030-7897029 Glycine max
Glyma.08G102900 5.0kb downstream 5.0kb downstream 10165 true Chr08: 7881865-7892029 Glycine max
Glyma.08G102900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7881865-7886864 Glycine max
Glyma.08G102900 10.0kb upstream 10.0kb upstream 15165 true Chr08: 7886865-7902029 Glycine max
Glyma.08G102900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7892030-7902029 Glycine max
Glyma.08G102900 10.0kb downstream 10.0kb downstream 15165 true Chr08: 7876865-7892029 Glycine max
Glyma.08G102900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7876865-7886864 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299758 5265 Fabidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.28936 0.0 6.75902   Low
cufflinks 21.021 0.0 58.004 High High
cufflinks 11.1639 0.0 29.8281    
cufflinks 8.07012 0.0 21.558    
cufflinks 29.7933 0.0 85.454 High High
cufflinks 10.7056 0.0 28.5812    
cufflinks 4.40173 0.0 12.1044    
cufflinks 4.31324 0.0 11.8536    
cufflinks 11.7149 0.0 31.3295    
cufflinks 7.382        
cufflinks 2.136       Low
cufflinks 13.056     High  
cufflinks 13.176     High  
cufflinks 16.564     High High
cufflinks 3.924        
cufflinks 3.896        
cufflinks 4.632        
cufflinks 33.807     High High
cufflinks 34.998     High High
cufflinks 1.999       Low
cufflinks 3.084        
cufflinks 2.97        
cufflinks 3.971        
cufflinks 2.747        
cufflinks 2.417        
cufflinks 4.671        

0 Strain