Gene : Glyma.08G042200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12722 - XAP-5 PROTEIN-RELATED Genomic Order:  422
Name:  ? Glyma.08G042200 Secondary Identifier:  ? PAC:30540688
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G042200 0.5kb upstream 0.5kb upstream 4158 true Chr08: 3339524-3343681 Glycine max
Glyma.08G042200 0.5kb upstream 0.5kb upstream 500 false Chr08: 3343182-3343681 Glycine max
Glyma.08G042200 0.5kb downstream 0.5kb downstream 4158 true Chr08: 3339024-3343181 Glycine max
Glyma.08G042200 0.5kb downstream 0.5kb downstream 500 false Chr08: 3339024-3339523 Glycine max
Glyma.08G042200 1.0kb upstream 1.0kb upstream 4658 true Chr08: 3339524-3344181 Glycine max
Glyma.08G042200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3343182-3344181 Glycine max
Glyma.08G042200 1.0kb downstream 1.0kb downstream 4658 true Chr08: 3338524-3343181 Glycine max
Glyma.08G042200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3338524-3339523 Glycine max
Glyma.08G042200 2.0kb upstream 2.0kb upstream 5658 true Chr08: 3339524-3345181 Glycine max
Glyma.08G042200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3343182-3345181 Glycine max
Glyma.08G042200 2.0kb downstream 2.0kb downstream 5658 true Chr08: 3337524-3343181 Glycine max
Glyma.08G042200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3337524-3339523 Glycine max
Glyma.08G042200 5.0kb upstream 5.0kb upstream 8658 true Chr08: 3339524-3348181 Glycine max
Glyma.08G042200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3343182-3348181 Glycine max
Glyma.08G042200 5.0kb downstream 5.0kb downstream 8658 true Chr08: 3334524-3343181 Glycine max
Glyma.08G042200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3334524-3339523 Glycine max
Glyma.08G042200 10.0kb upstream 10.0kb upstream 13658 true Chr08: 3339524-3353181 Glycine max
Glyma.08G042200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3343182-3353181 Glycine max
Glyma.08G042200 10.0kb downstream 10.0kb downstream 13658 true Chr08: 3329524-3343181 Glycine max
Glyma.08G042200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3329524-3339523 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299090 5265 Fabidae View MSA
124065875 5270 Rosid View MSA
123737386 5271 Pentapetalae View MSA
122792820 5272 Eudicot View MSA
122044828 5273 Angiosperm View MSA
121346265 5274 Embryophyte View MSA
123426608 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3392 0.0 53.032    
cufflinks 10.2953 0.0 41.5691    
cufflinks 22.1721 0.0 92.3321 High High
cufflinks 8.48401 0.0 38.4057    
cufflinks 9.16424 0.0 40.8358    
cufflinks 12.8363 0.0 54.6316    
cufflinks 9.0284 0.0 40.2832    
cufflinks 9.75991 0.0 43.4193    
cufflinks 11.9914 0.0 51.2002    
cufflinks 0.862       Low
cufflinks 1.272        
cufflinks 2.119       High
cufflinks 1.225        
cufflinks 1.301        
cufflinks 2.076       High
cufflinks 1.141        
cufflinks 1.486        
cufflinks 1.175        
cufflinks 1.268        
cufflinks 1.092        
cufflinks 1.474        
cufflinks 1.096        
cufflinks 1.187        
cufflinks 1.147        
cufflinks 1.141        
cufflinks 1.356        

0 Strain