Gene : Glyma.08G030500 G. max Wm82.a2.v1
Defline:  (1 of 11) 2.1.1.104 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase Genomic Order:  305
Name:  ? Glyma.08G030500 Secondary Identifier:  ? PAC:30539668
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1121 Glycine max pathologic  
Gmax PWY-361 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G030500 0.5kb upstream 0.5kb upstream 2410 true Chr08: 2432696-2435105 Glycine max
Glyma.08G030500 0.5kb upstream 0.5kb upstream 500 false Chr08: 2432696-2433195 Glycine max
Glyma.08G030500 0.5kb downstream 0.5kb downstream 2410 true Chr08: 2433196-2435605 Glycine max
Glyma.08G030500 0.5kb downstream 0.5kb downstream 500 false Chr08: 2435106-2435605 Glycine max
Glyma.08G030500 1.0kb upstream 1.0kb upstream 2910 true Chr08: 2432196-2435105 Glycine max
Glyma.08G030500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2432196-2433195 Glycine max
Glyma.08G030500 1.0kb downstream 1.0kb downstream 2910 true Chr08: 2433196-2436105 Glycine max
Glyma.08G030500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2435106-2436105 Glycine max
Glyma.08G030500 2.0kb upstream 2.0kb upstream 3910 true Chr08: 2431196-2435105 Glycine max
Glyma.08G030500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2431196-2433195 Glycine max
Glyma.08G030500 2.0kb downstream 2.0kb downstream 3910 true Chr08: 2433196-2437105 Glycine max
Glyma.08G030500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2435106-2437105 Glycine max
Glyma.08G030500 5.0kb upstream 5.0kb upstream 6910 true Chr08: 2428196-2435105 Glycine max
Glyma.08G030500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2428196-2433195 Glycine max
Glyma.08G030500 5.0kb downstream 5.0kb downstream 6910 true Chr08: 2433196-2440105 Glycine max
Glyma.08G030500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2435106-2440105 Glycine max
Glyma.08G030500 10.0kb upstream 10.0kb upstream 11910 true Chr08: 2423196-2435105 Glycine max
Glyma.08G030500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2423196-2433195 Glycine max
Glyma.08G030500 10.0kb downstream 10.0kb downstream 11910 true Chr08: 2433196-2445105 Glycine max
Glyma.08G030500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2435106-2445105 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314949 5265 Fabidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0758289 0.0 1.53846 Low Low
cufflinks 0.165632 0.0 2.44937 Low Low
cufflinks 0.562958 0.0 3.92909    
cufflinks 0.685403 0.0 4.89849    
cufflinks 2.76279 0.0 13.7517    
cufflinks 5.25036 0.0 21.0097    
cufflinks 4.65835 0.0 19.0442    
cufflinks 2.14554 0.0 10.6635    
cufflinks 11.9196 0.0 40.8132   High
cufflinks 12.877     High High
cufflinks 0.243        
cufflinks 2.143        
cufflinks 3.293       High
cufflinks 0.969        
cufflinks 1.179        
cufflinks 0.139        
cufflinks 1.051        
cufflinks 12.24     High High
cufflinks 0.256        
cufflinks 0.065     Low Low
cufflinks 0.271        
cufflinks 0.058     Low Low
cufflinks 0.146        
cufflinks 0.148        
cufflinks 0.076     Low Low
cufflinks 0.621        

0 Strain