Gene : Glyma.08G006700 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  67
Name:  ? Glyma.08G006700 Secondary Identifier:  ? PAC:30538327
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G006700 0.5kb upstream 0.5kb upstream 1991 true Chr08: 526664-528654 Glycine max
Glyma.08G006700 0.5kb upstream 0.5kb upstream 500 false Chr08: 528155-528654 Glycine max
Glyma.08G006700 0.5kb downstream 0.5kb downstream 1991 true Chr08: 526164-528154 Glycine max
Glyma.08G006700 0.5kb downstream 0.5kb downstream 500 false Chr08: 526164-526663 Glycine max
Glyma.08G006700 1.0kb upstream 1.0kb upstream 2491 true Chr08: 526664-529154 Glycine max
Glyma.08G006700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 528155-529154 Glycine max
Glyma.08G006700 1.0kb downstream 1.0kb downstream 2491 true Chr08: 525664-528154 Glycine max
Glyma.08G006700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 525664-526663 Glycine max
Glyma.08G006700 2.0kb upstream 2.0kb upstream 3491 true Chr08: 526664-530154 Glycine max
Glyma.08G006700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 528155-530154 Glycine max
Glyma.08G006700 2.0kb downstream 2.0kb downstream 3491 true Chr08: 524664-528154 Glycine max
Glyma.08G006700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 524664-526663 Glycine max
Glyma.08G006700 5.0kb upstream 5.0kb upstream 6491 true Chr08: 526664-533154 Glycine max
Glyma.08G006700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 528155-533154 Glycine max
Glyma.08G006700 5.0kb downstream 5.0kb downstream 6491 true Chr08: 521664-528154 Glycine max
Glyma.08G006700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 521664-526663 Glycine max
Glyma.08G006700 10.0kb upstream 10.0kb upstream 11491 true Chr08: 526664-538154 Glycine max
Glyma.08G006700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 528155-538154 Glycine max
Glyma.08G006700 10.0kb downstream 10.0kb downstream 11491 true Chr08: 516664-528154 Glycine max
Glyma.08G006700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 516664-526663 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303393 5265 Fabidae View MSA
124050196 5270 Rosid View MSA
123737959 5271 Pentapetalae View MSA
122788156 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.895593 0.0 3.25768    
cufflinks 0.313112 0.0 1.19996    
cufflinks 0.28924 0.0 1.11218    
cufflinks 0.351627 0.0 1.34087    
cufflinks 0.708758 0.0 2.61084    
cufflinks 0.370977 0.0 1.40988    
cufflinks 3.38566 0.0 10.7651   High
cufflinks 0.486516 0.0 1.82838    
cufflinks 0.928149 0.0 3.36882    
cufflinks 0.179       Low
cufflinks 1.023       High
cufflinks 0.5        
cufflinks 0.727        
cufflinks 0.531        
cufflinks 0.652        
cufflinks 0.564        
cufflinks 0.541        
cufflinks 0.747        
cufflinks 0.415        
cufflinks 0.472        
cufflinks 1.064       High
cufflinks 0.453        
cufflinks 0.524        
cufflinks 0.679        
cufflinks 0.525        
cufflinks 1.502       High

0 Strain