Gene : Glyma.07G060700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33222:SF4 - PROTEIN CURVATURE THYLAKOID 1A, CHLOROPLASTIC Genomic Order:  607
Name:  ? Glyma.07G060700 Secondary Identifier:  ? PAC:30495601
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G060700 0.5kb upstream 0.5kb upstream 3600 true Chr07: 5387226-5390825 Glycine max
Glyma.07G060700 0.5kb upstream 0.5kb upstream 500 false Chr07: 5390326-5390825 Glycine max
Glyma.07G060700 0.5kb downstream 0.5kb downstream 3600 true Chr07: 5386726-5390325 Glycine max
Glyma.07G060700 0.5kb downstream 0.5kb downstream 500 false Chr07: 5386726-5387225 Glycine max
Glyma.07G060700 1.0kb upstream 1.0kb upstream 4100 true Chr07: 5387226-5391325 Glycine max
Glyma.07G060700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 5390326-5391325 Glycine max
Glyma.07G060700 1.0kb downstream 1.0kb downstream 4100 true Chr07: 5386226-5390325 Glycine max
Glyma.07G060700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 5386226-5387225 Glycine max
Glyma.07G060700 2.0kb upstream 2.0kb upstream 5100 true Chr07: 5387226-5392325 Glycine max
Glyma.07G060700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 5390326-5392325 Glycine max
Glyma.07G060700 2.0kb downstream 2.0kb downstream 5100 true Chr07: 5385226-5390325 Glycine max
Glyma.07G060700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 5385226-5387225 Glycine max
Glyma.07G060700 5.0kb upstream 5.0kb upstream 8100 true Chr07: 5387226-5395325 Glycine max
Glyma.07G060700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 5390326-5395325 Glycine max
Glyma.07G060700 5.0kb downstream 5.0kb downstream 8100 true Chr07: 5382226-5390325 Glycine max
Glyma.07G060700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 5382226-5387225 Glycine max
Glyma.07G060700 10.0kb upstream 10.0kb upstream 13100 true Chr07: 5387226-5400325 Glycine max
Glyma.07G060700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 5390326-5400325 Glycine max
Glyma.07G060700 10.0kb downstream 10.0kb downstream 13100 true Chr07: 5377226-5390325 Glycine max
Glyma.07G060700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 5377226-5387225 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303558 5265 Fabidae View MSA
124073976 5270 Rosid View MSA
123742210 5271 Pentapetalae View MSA
122794719 5272 Eudicot View MSA
122051367 5273 Angiosperm View MSA
121345207 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 294.592 0.0 1276.15 High High
cufflinks 245.104 0.0 986.233 High High
cufflinks 90.6528 0.0 324.573 High  
cufflinks 101.162 0.0 368.137 High  
cufflinks 16.6744 0.0 64.2739   Low
cufflinks 14.5427 0.0 55.833   Low
cufflinks 76.0296 0.0 264.918 High  
cufflinks 93.1385 0.0 335.188 High  
cufflinks 8.26293 0.0 32.7516   Low
cufflinks 20.399     High  
cufflinks 0.293       Low
cufflinks 13.146     High  
cufflinks 0.33       Low
cufflinks 0.468        
cufflinks 0.224       Low
cufflinks 68.227     High High
cufflinks 0.544        
cufflinks 13.03     High  
cufflinks 23.436     High  
cufflinks 78.712     High High
cufflinks 0.233       Low
cufflinks 78.512     High High
cufflinks 64.196     High High
cufflinks 0.399        
cufflinks 75.041     High High
cufflinks 0.504        

0 Strain