Gene : Glyma.06G173500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12741:SF5 - CALLOSE SYNTHASE 10 Genomic Order:  1735
Name:  ? Glyma.06G173500 Secondary Identifier:  ? PAC:30551130
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6773 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G173500 0.5kb upstream 0.5kb upstream 51341 true Chr06: 14595471-14646811 Glycine max
Glyma.06G173500 0.5kb upstream 0.5kb upstream 500 false Chr06: 14595471-14595970 Glycine max
Glyma.06G173500 0.5kb downstream 0.5kb downstream 51341 true Chr06: 14595971-14647311 Glycine max
Glyma.06G173500 0.5kb downstream 0.5kb downstream 500 false Chr06: 14646812-14647311 Glycine max
Glyma.06G173500 1.0kb upstream 1.0kb upstream 51841 true Chr06: 14594971-14646811 Glycine max
Glyma.06G173500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 14594971-14595970 Glycine max
Glyma.06G173500 1.0kb downstream 1.0kb downstream 51841 true Chr06: 14595971-14647811 Glycine max
Glyma.06G173500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 14646812-14647811 Glycine max
Glyma.06G173500 2.0kb upstream 2.0kb upstream 52841 true Chr06: 14593971-14646811 Glycine max
Glyma.06G173500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 14593971-14595970 Glycine max
Glyma.06G173500 2.0kb downstream 2.0kb downstream 52841 true Chr06: 14595971-14648811 Glycine max
Glyma.06G173500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 14646812-14648811 Glycine max
Glyma.06G173500 5.0kb upstream 5.0kb upstream 55841 true Chr06: 14590971-14646811 Glycine max
Glyma.06G173500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 14590971-14595970 Glycine max
Glyma.06G173500 5.0kb downstream 5.0kb downstream 55841 true Chr06: 14595971-14651811 Glycine max
Glyma.06G173500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 14646812-14651811 Glycine max
Glyma.06G173500 10.0kb upstream 10.0kb upstream 60841 true Chr06: 14585971-14646811 Glycine max
Glyma.06G173500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 14585971-14595970 Glycine max
Glyma.06G173500 10.0kb downstream 10.0kb downstream 60841 true Chr06: 14595971-14656811 Glycine max
Glyma.06G173500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 14646812-14656811 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243860 5265 Fabidae Singleton cluster - no MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.08603 0.0 24.9257    
cufflinks 9.21004 0.0 28.9642    
cufflinks 8.14215 0.0 25.2958    
cufflinks 8.42994 0.0 26.1594    
cufflinks 7.66255 0.0 23.4283    
cufflinks 4.5368 0.0 13.4839   Low
cufflinks 7.26052 0.0 22.0178    
cufflinks 8.75164 0.0 27.2429    
cufflinks 8.81201 0.0 27.5251    
cufflinks 1.172        
cufflinks 1.626        
cufflinks 1.123        
cufflinks 0.983       Low
cufflinks 1.044        
cufflinks 1.607        
cufflinks 1.884       High
cufflinks 0.736       Low
cufflinks 1.398        
cufflinks 1.616        
cufflinks 1.19        
cufflinks 1.849       High
cufflinks 1.575        
cufflinks 1.136        
cufflinks 1.503        
cufflinks 1.309        
cufflinks 1.502        

0 Strain