Gene : Glyma.06G139800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31008//PTHR31008:SF5 - COP1-INTERACTING PROTEIN-RELATED Genomic Order:  1398
Name:  ? Glyma.06G139800 Secondary Identifier:  ? PAC:30552414
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G139800 0.5kb upstream 0.5kb upstream 7841 true Chr06: 11401801-11409641 Glycine max
Glyma.06G139800 0.5kb upstream 0.5kb upstream 500 false Chr06: 11409142-11409641 Glycine max
Glyma.06G139800 0.5kb downstream 0.5kb downstream 7841 true Chr06: 11401301-11409141 Glycine max
Glyma.06G139800 0.5kb downstream 0.5kb downstream 500 false Chr06: 11401301-11401800 Glycine max
Glyma.06G139800 1.0kb upstream 1.0kb upstream 8341 true Chr06: 11401801-11410141 Glycine max
Glyma.06G139800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 11409142-11410141 Glycine max
Glyma.06G139800 1.0kb downstream 1.0kb downstream 8341 true Chr06: 11400801-11409141 Glycine max
Glyma.06G139800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 11400801-11401800 Glycine max
Glyma.06G139800 2.0kb upstream 2.0kb upstream 9341 true Chr06: 11401801-11411141 Glycine max
Glyma.06G139800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 11409142-11411141 Glycine max
Glyma.06G139800 2.0kb downstream 2.0kb downstream 9341 true Chr06: 11399801-11409141 Glycine max
Glyma.06G139800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 11399801-11401800 Glycine max
Glyma.06G139800 5.0kb upstream 5.0kb upstream 12341 true Chr06: 11401801-11414141 Glycine max
Glyma.06G139800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 11409142-11414141 Glycine max
Glyma.06G139800 5.0kb downstream 5.0kb downstream 12341 true Chr06: 11396801-11409141 Glycine max
Glyma.06G139800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 11396801-11401800 Glycine max
Glyma.06G139800 10.0kb upstream 10.0kb upstream 17341 true Chr06: 11401801-11419141 Glycine max
Glyma.06G139800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 11409142-11419141 Glycine max
Glyma.06G139800 10.0kb downstream 10.0kb downstream 17341 true Chr06: 11391801-11409141 Glycine max
Glyma.06G139800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 11391801-11401800 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303099 5265 Fabidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.07473 0.0 35.1087    
cufflinks 11.2229 0.0 71.2418   High
cufflinks 4.34916 0.0 26.4624   Low
cufflinks 8.30612 0.0 53.5025    
cufflinks 11.5991 0.0 75.0917   High
cufflinks 4.04325 0.0 26.283   Low
cufflinks 6.98697 0.0 43.354    
cufflinks 8.30382 0.0 53.329    
cufflinks 6.34289 0.0 39.2294    
cufflinks 0.745        
cufflinks 0.037     Low Low
cufflinks 0.425        
cufflinks 0.688        
cufflinks 0.889        
cufflinks 0.134        
cufflinks 0.879        
cufflinks 0.12        
cufflinks 0.904        
cufflinks 0.802        
cufflinks 0.88        
cufflinks 0.074       Low
cufflinks 0.838        
cufflinks 0.84        
cufflinks 0.05     Low Low
cufflinks 0.882        
cufflinks 0.138        

0 Strain