Gene : Glyma.05G072900 G. max Wm82.a2.v1
Defline:  (1 of 5) PF00077//PF00098 - Retroviral aspartyl protease (RVP) // Zinc knuckle (zf-CCHC) Genomic Order:  729
Name:  ? Glyma.05G072900 Secondary Identifier:  ? PAC:30523802
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G072900 0.5kb upstream 0.5kb upstream 3403 true Chr05: 8085307-8088709 Glycine max
Glyma.05G072900 0.5kb upstream 0.5kb upstream 500 false Chr05: 8088210-8088709 Glycine max
Glyma.05G072900 0.5kb downstream 0.5kb downstream 3403 true Chr05: 8084807-8088209 Glycine max
Glyma.05G072900 0.5kb downstream 0.5kb downstream 500 false Chr05: 8084807-8085306 Glycine max
Glyma.05G072900 1.0kb upstream 1.0kb upstream 3903 true Chr05: 8085307-8089209 Glycine max
Glyma.05G072900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 8088210-8089209 Glycine max
Glyma.05G072900 1.0kb downstream 1.0kb downstream 3903 true Chr05: 8084307-8088209 Glycine max
Glyma.05G072900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 8084307-8085306 Glycine max
Glyma.05G072900 2.0kb upstream 2.0kb upstream 4903 true Chr05: 8085307-8090209 Glycine max
Glyma.05G072900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 8088210-8090209 Glycine max
Glyma.05G072900 2.0kb downstream 2.0kb downstream 4903 true Chr05: 8083307-8088209 Glycine max
Glyma.05G072900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 8083307-8085306 Glycine max
Glyma.05G072900 5.0kb upstream 5.0kb upstream 7903 true Chr05: 8085307-8093209 Glycine max
Glyma.05G072900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 8088210-8093209 Glycine max
Glyma.05G072900 5.0kb downstream 5.0kb downstream 7903 true Chr05: 8080307-8088209 Glycine max
Glyma.05G072900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 8080307-8085306 Glycine max
Glyma.05G072900 10.0kb upstream 10.0kb upstream 12903 true Chr05: 8085307-8098209 Glycine max
Glyma.05G072900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 8088210-8098209 Glycine max
Glyma.05G072900 10.0kb downstream 10.0kb downstream 12903 true Chr05: 8075307-8088209 Glycine max
Glyma.05G072900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 8075307-8085306 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028362 5273 Angiosperm View MSA
122250435 5265 Fabidae View MSA
124040401 5270 Rosid View MSA
123751157 5271 Pentapetalae View MSA
122773930 5272 Eudicot View MSA
121297863 5274 Embryophyte View MSA
123335877 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.00789982 0.0 0.0361043 Low  
cufflinks 0.00824083 0.0 0.0373724 Low  
cufflinks 1.3694 0.0 4.49526   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.00787161 0.0 0.0360536 Low  
cufflinks 0.0147142 0.0 0.0634163 Low  
cufflinks 0.00865406 0.0 0.0391422 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.104     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain