Gene : Glyma.05G055700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12000:SF3 - LEGUMAIN Genomic Order:  557
Name:  ? Glyma.05G055700 Secondary Identifier:  ? PAC:30527598
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G055700 0.5kb upstream 0.5kb upstream 5098 true Chr05: 5050228-5055325 Glycine max
Glyma.05G055700 0.5kb upstream 0.5kb upstream 500 false Chr05: 5050228-5050727 Glycine max
Glyma.05G055700 0.5kb downstream 0.5kb downstream 5098 true Chr05: 5050728-5055825 Glycine max
Glyma.05G055700 0.5kb downstream 0.5kb downstream 500 false Chr05: 5055326-5055825 Glycine max
Glyma.05G055700 1.0kb upstream 1.0kb upstream 5598 true Chr05: 5049728-5055325 Glycine max
Glyma.05G055700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5049728-5050727 Glycine max
Glyma.05G055700 1.0kb downstream 1.0kb downstream 5598 true Chr05: 5050728-5056325 Glycine max
Glyma.05G055700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5055326-5056325 Glycine max
Glyma.05G055700 2.0kb upstream 2.0kb upstream 6598 true Chr05: 5048728-5055325 Glycine max
Glyma.05G055700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5048728-5050727 Glycine max
Glyma.05G055700 2.0kb downstream 2.0kb downstream 6598 true Chr05: 5050728-5057325 Glycine max
Glyma.05G055700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5055326-5057325 Glycine max
Glyma.05G055700 5.0kb upstream 5.0kb upstream 9598 true Chr05: 5045728-5055325 Glycine max
Glyma.05G055700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5045728-5050727 Glycine max
Glyma.05G055700 5.0kb downstream 5.0kb downstream 9598 true Chr05: 5050728-5060325 Glycine max
Glyma.05G055700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5055326-5060325 Glycine max
Glyma.05G055700 10.0kb upstream 10.0kb upstream 14598 true Chr05: 5040728-5055325 Glycine max
Glyma.05G055700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5040728-5050727 Glycine max
Glyma.05G055700 10.0kb downstream 10.0kb downstream 14598 true Chr05: 5050728-5065325 Glycine max
Glyma.05G055700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5055326-5065325 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301909 5265 Fabidae View MSA
124050213 5270 Rosid View MSA
123750585 5271 Pentapetalae View MSA
122797224 5272 Eudicot View MSA
122048479 5273 Angiosperm View MSA
121350664 5274 Embryophyte View MSA
123428632 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13996 0.0 6.7003    
cufflinks 0.309837 0.0 1.15697   Low
cufflinks 14.2043 0.0 37.903    
cufflinks 4.98228 0.0 13.9904    
cufflinks 8.82864 0.0 23.7932    
cufflinks 0.762602 0.0 2.69531   Low
cufflinks 103.923 0.0 344.041 High High
cufflinks 24.8213 0.0 67.5051 High  
cufflinks 10.0662 0.0 26.9815    
cufflinks 0.488        
cufflinks 15.732     High High
cufflinks 3.818        
cufflinks 0.298        
cufflinks 0.475        
cufflinks 22.991     High High
cufflinks 0.068     Low Low
cufflinks 4.568        
cufflinks 1.124        
cufflinks 0.152        
cufflinks 0.073     Low Low
cufflinks 11.731     High High
cufflinks 0.198        
cufflinks 0.103     Low Low
cufflinks 11.752     High High
cufflinks 0.139        
cufflinks 10.713     High High

0 Strain