Protein Domain : IPR005059

Type:  Family Name:  DNA-directed RNA polymerase, 35kDa subunit, poxviral
Description:  DNA-directed RNA polymerases (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs.RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.The DNA-dependent RNA polymerase from vaccinia virions has a molecular weight of approximately 500 kDa and can be dissociated into putative subunits of 140, 137, 37, 35, 31, 22, and 17 kDa. This group represents a DNA-directed RNA polymerase, 35 kDa subunit. Short Name:  DNA-dir_RNA_pol_35kDa_poxviral

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PF03396
PIRSF000746
PD009961

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR005059
GO:0003899 IPR005059
GO:0019083 IPR005059

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR005059
GO:0003899 IPR005059
GO:0019083 IPR005059

0 Parent Features

15 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Cagra.0686s0081.1.p PAC:28901016 Capsella grandiflora 142  
DCAR_013157 PAC:36079764 Daucus carota 128  
Solyc10g007350.2.1 PAC:36155085 Solanum lycopersicum 139  
Solyc12g014290.1.1 PAC:36148958 Solanum lycopersicum 139  
Solyc07g062400.2.1 PAC:36161783 Solanum lycopersicum 140  
PGSC0003DMP400026892 PAC:37445696 Solanum tuberosum 139  
PGSC0003DMP400012592 PAC:37434340 Solanum tuberosum 140  
evm.model.Scaffold_770.1666 PAC:37886279 Coffea arabica 139  
evm.model.Scaffold_770.445 PAC:37886275 Coffea arabica 139  
Carub.0005s2547.1.p R0H6J5 PAC:39226351 Capsella rubella 142  
Eruve.0012s0044.1.p PAC:39921269 Eruca vesicaria 142  
Eruve.1725s0005.1.p PAC:39948119 Eruca vesicaria 142  
Solyc10g007350.3.1 PAC:41463134 Solanum lycopersicum 152  
Solyc07g062400.3.1 PAC:41490573 Solanum lycopersicum 140  
Solyc12g014290.2.1 PAC:41481283 Solanum lycopersicum 139  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            3052291
            10499798