Gene : Cagra.8005s0025 C. grandiflora v1.1
Defline:  (1 of 6) PTHR27000:SF136 - POLYGALACTURONASE INHIBITOR 1-RELATED Genomic Order:  25
Name:  ? Cagra.8005s0025 Secondary Identifier:  ? PAC:28901876
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8005s0025 0.5kb upstream 0.5kb upstream 1762 true Scaffold8005: 95405-97166 Capsella grandiflora
Cagra.8005s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold8005: 95405-95904 Capsella grandiflora
Cagra.8005s0025 0.5kb downstream 0.5kb downstream 1762 true Scaffold8005: 95905-97666 Capsella grandiflora
Cagra.8005s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold8005: 97167-97666 Capsella grandiflora
Cagra.8005s0025 1.0kb upstream 1.0kb upstream 2262 true Scaffold8005: 94905-97166 Capsella grandiflora
Cagra.8005s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold8005: 94905-95904 Capsella grandiflora
Cagra.8005s0025 1.0kb downstream 1.0kb downstream 2262 true Scaffold8005: 95905-98166 Capsella grandiflora
Cagra.8005s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold8005: 97167-98166 Capsella grandiflora
Cagra.8005s0025 2.0kb upstream 2.0kb upstream 3262 true Scaffold8005: 93905-97166 Capsella grandiflora
Cagra.8005s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold8005: 93905-95904 Capsella grandiflora
Cagra.8005s0025 2.0kb downstream 2.0kb downstream 3262 true Scaffold8005: 95905-99166 Capsella grandiflora
Cagra.8005s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold8005: 97167-99166 Capsella grandiflora
Cagra.8005s0025 5.0kb upstream 5.0kb upstream 6262 true Scaffold8005: 90905-97166 Capsella grandiflora
Cagra.8005s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold8005: 90905-95904 Capsella grandiflora
Cagra.8005s0025 5.0kb downstream 5.0kb downstream 6262 true Scaffold8005: 95905-102166 Capsella grandiflora
Cagra.8005s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold8005: 97167-102166 Capsella grandiflora
Cagra.8005s0025 10.0kb upstream 10.0kb upstream 11262 true Scaffold8005: 85905-97166 Capsella grandiflora
Cagra.8005s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold8005: 85905-95904 Capsella grandiflora
Cagra.8005s0025 10.0kb downstream 10.0kb downstream 7638 true Scaffold8005: 95905-103542 Capsella grandiflora
Cagra.8005s0025 10.0kb downstream 10.0kb downstream 6376 false Scaffold8005: 97167-103542 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380072 5261 Brassicaceae View MSA
123802546 5264 Brassicales-Malvales View MSA
124299734 5266 SBM View MSA
124251810 5268 Malvidae View MSA
124063977 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain