Gene : Cagra.5497s0011 C. grandiflora v1.1
Defline:  (1 of 2) PTHR18896:SF64 - PHOSPHOLIPASE D P2 Genomic Order:  11
Name:  ? Cagra.5497s0011 Secondary Identifier:  ? PAC:28895526
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPASYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3561 Capsella grandiflora pathologic  
Cgrandiflora PWY-7039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5497s0011 0.5kb upstream 0.5kb upstream 8694 true Scaffold5497: 30400-39093 Capsella grandiflora
Cagra.5497s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold5497: 30400-30899 Capsella grandiflora
Cagra.5497s0011 0.5kb downstream 0.5kb downstream 8694 true Scaffold5497: 30900-39593 Capsella grandiflora
Cagra.5497s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold5497: 39094-39593 Capsella grandiflora
Cagra.5497s0011 1.0kb upstream 1.0kb upstream 9194 true Scaffold5497: 29900-39093 Capsella grandiflora
Cagra.5497s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold5497: 29900-30899 Capsella grandiflora
Cagra.5497s0011 1.0kb downstream 1.0kb downstream 9194 true Scaffold5497: 30900-40093 Capsella grandiflora
Cagra.5497s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold5497: 39094-40093 Capsella grandiflora
Cagra.5497s0011 2.0kb upstream 2.0kb upstream 10194 true Scaffold5497: 28900-39093 Capsella grandiflora
Cagra.5497s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold5497: 28900-30899 Capsella grandiflora
Cagra.5497s0011 2.0kb downstream 2.0kb downstream 10194 true Scaffold5497: 30900-41093 Capsella grandiflora
Cagra.5497s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold5497: 39094-41093 Capsella grandiflora
Cagra.5497s0011 5.0kb upstream 5.0kb upstream 13194 true Scaffold5497: 25900-39093 Capsella grandiflora
Cagra.5497s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold5497: 25900-30899 Capsella grandiflora
Cagra.5497s0011 5.0kb downstream 5.0kb downstream 13194 true Scaffold5497: 30900-44093 Capsella grandiflora
Cagra.5497s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold5497: 39094-44093 Capsella grandiflora
Cagra.5497s0011 10.0kb upstream 10.0kb upstream 18194 true Scaffold5497: 20900-39093 Capsella grandiflora
Cagra.5497s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold5497: 20900-30899 Capsella grandiflora
Cagra.5497s0011 10.0kb downstream 10.0kb downstream 18194 true Scaffold5497: 30900-49093 Capsella grandiflora
Cagra.5497s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold5497: 39094-49093 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370901 5261 Brassicaceae View MSA
123827453 5264 Brassicales-Malvales View MSA
124338085 5266 SBM View MSA
124241896 5268 Malvidae View MSA
124061859 5270 Rosid View MSA
123744231 5271 Pentapetalae View MSA
122791930 5272 Eudicot View MSA
122042755 5273 Angiosperm View MSA
121345352 5274 Embryophyte View MSA
123380200 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain