Gene : Cagra.1742s0034 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33B Genomic Order:  34
Name:  ? Cagra.1742s0034 Secondary Identifier:  ? PAC:28910566
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1742s0034 0.5kb upstream 0.5kb upstream 6264 true Scaffold1742: 140526-146789 Capsella grandiflora
Cagra.1742s0034 0.5kb upstream 0.5kb upstream 500 false Scaffold1742: 140526-141025 Capsella grandiflora
Cagra.1742s0034 0.5kb downstream 0.5kb downstream 6264 true Scaffold1742: 141026-147289 Capsella grandiflora
Cagra.1742s0034 0.5kb downstream 0.5kb downstream 500 false Scaffold1742: 146790-147289 Capsella grandiflora
Cagra.1742s0034 1.0kb upstream 1.0kb upstream 6764 true Scaffold1742: 140026-146789 Capsella grandiflora
Cagra.1742s0034 1.0kb upstream 1.0kb upstream 1000 false Scaffold1742: 140026-141025 Capsella grandiflora
Cagra.1742s0034 1.0kb downstream 1.0kb downstream 6764 true Scaffold1742: 141026-147789 Capsella grandiflora
Cagra.1742s0034 1.0kb downstream 1.0kb downstream 1000 false Scaffold1742: 146790-147789 Capsella grandiflora
Cagra.1742s0034 2.0kb upstream 2.0kb upstream 7764 true Scaffold1742: 139026-146789 Capsella grandiflora
Cagra.1742s0034 2.0kb upstream 2.0kb upstream 2000 false Scaffold1742: 139026-141025 Capsella grandiflora
Cagra.1742s0034 2.0kb downstream 2.0kb downstream 7764 true Scaffold1742: 141026-148789 Capsella grandiflora
Cagra.1742s0034 2.0kb downstream 2.0kb downstream 2000 false Scaffold1742: 146790-148789 Capsella grandiflora
Cagra.1742s0034 5.0kb upstream 5.0kb upstream 10764 true Scaffold1742: 136026-146789 Capsella grandiflora
Cagra.1742s0034 5.0kb upstream 5.0kb upstream 5000 false Scaffold1742: 136026-141025 Capsella grandiflora
Cagra.1742s0034 5.0kb downstream 5.0kb downstream 10764 true Scaffold1742: 141026-151789 Capsella grandiflora
Cagra.1742s0034 5.0kb downstream 5.0kb downstream 5000 false Scaffold1742: 146790-151789 Capsella grandiflora
Cagra.1742s0034 10.0kb upstream 10.0kb upstream 15764 true Scaffold1742: 131026-146789 Capsella grandiflora
Cagra.1742s0034 10.0kb upstream 10.0kb upstream 10000 false Scaffold1742: 131026-141025 Capsella grandiflora
Cagra.1742s0034 10.0kb downstream 10.0kb downstream 15764 true Scaffold1742: 141026-156789 Capsella grandiflora
Cagra.1742s0034 10.0kb downstream 10.0kb downstream 10000 false Scaffold1742: 146790-156789 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332860 5261 Brassicaceae Singleton cluster - no MSA
123773882 5264 Brassicales-Malvales Singleton cluster - no MSA
124272345 5266 SBM Singleton cluster - no MSA
124128180 5268 Malvidae Singleton cluster - no MSA
124038313 5270 Rosid View MSA
123752056 5271 Pentapetalae View MSA
122787734 5272 Eudicot View MSA
122044199 5273 Angiosperm View MSA
121343889 5274 Embryophyte View MSA
123428072 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain