Gene : Cagra.1549s0006 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13683//PTHR13683:SF342 - ASPARTYL PROTEASES Genomic Order:  6
Name:  ? Cagra.1549s0006 Secondary Identifier:  ? PAC:28918724
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1549s0006 0.5kb upstream 0.5kb upstream 3512 true Scaffold1549: 23788-27299 Capsella grandiflora
Cagra.1549s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold1549: 23788-24287 Capsella grandiflora
Cagra.1549s0006 0.5kb downstream 0.5kb downstream 3512 true Scaffold1549: 24288-27799 Capsella grandiflora
Cagra.1549s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold1549: 27300-27799 Capsella grandiflora
Cagra.1549s0006 1.0kb upstream 1.0kb upstream 4012 true Scaffold1549: 23288-27299 Capsella grandiflora
Cagra.1549s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold1549: 23288-24287 Capsella grandiflora
Cagra.1549s0006 1.0kb downstream 1.0kb downstream 4012 true Scaffold1549: 24288-28299 Capsella grandiflora
Cagra.1549s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold1549: 27300-28299 Capsella grandiflora
Cagra.1549s0006 2.0kb upstream 2.0kb upstream 5012 true Scaffold1549: 22288-27299 Capsella grandiflora
Cagra.1549s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold1549: 22288-24287 Capsella grandiflora
Cagra.1549s0006 2.0kb downstream 2.0kb downstream 5012 true Scaffold1549: 24288-29299 Capsella grandiflora
Cagra.1549s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold1549: 27300-29299 Capsella grandiflora
Cagra.1549s0006 5.0kb upstream 5.0kb upstream 8012 true Scaffold1549: 19288-27299 Capsella grandiflora
Cagra.1549s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold1549: 19288-24287 Capsella grandiflora
Cagra.1549s0006 5.0kb downstream 5.0kb downstream 8012 true Scaffold1549: 24288-32299 Capsella grandiflora
Cagra.1549s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold1549: 27300-32299 Capsella grandiflora
Cagra.1549s0006 10.0kb upstream 10.0kb upstream 13012 true Scaffold1549: 14288-27299 Capsella grandiflora
Cagra.1549s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold1549: 14288-24287 Capsella grandiflora
Cagra.1549s0006 10.0kb downstream 10.0kb downstream 8747 true Scaffold1549: 24288-33034 Capsella grandiflora
Cagra.1549s0006 10.0kb downstream 10.0kb downstream 5735 false Scaffold1549: 27300-33034 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367489 5261 Brassicaceae View MSA
123828024 5264 Brassicales-Malvales View MSA
124347964 5266 SBM View MSA
124245279 5268 Malvidae View MSA
124072520 5270 Rosid View MSA
123741714 5271 Pentapetalae View MSA
122786782 5272 Eudicot View MSA
122041856 5273 Angiosperm View MSA
121346441 5274 Embryophyte View MSA
123428674 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain