Gene : Cagra.1472s0006 C. grandiflora v1.1
Defline:  (1 of 7) 1.1.1.37 - Malate dehydrogenase / Malic dehydrogenase Genomic Order:  6
Name:  ? Cagra.1472s0006 Secondary Identifier:  ? PAC:28904816
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1472s0006 0.5kb upstream 0.5kb upstream 2702 true Scaffold1472: 15523-18224 Capsella grandiflora
Cagra.1472s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold1472: 15523-16022 Capsella grandiflora
Cagra.1472s0006 0.5kb downstream 0.5kb downstream 2702 true Scaffold1472: 16023-18724 Capsella grandiflora
Cagra.1472s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold1472: 18225-18724 Capsella grandiflora
Cagra.1472s0006 1.0kb upstream 1.0kb upstream 3202 true Scaffold1472: 15023-18224 Capsella grandiflora
Cagra.1472s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold1472: 15023-16022 Capsella grandiflora
Cagra.1472s0006 1.0kb downstream 1.0kb downstream 3202 true Scaffold1472: 16023-19224 Capsella grandiflora
Cagra.1472s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold1472: 18225-19224 Capsella grandiflora
Cagra.1472s0006 2.0kb upstream 2.0kb upstream 4202 true Scaffold1472: 14023-18224 Capsella grandiflora
Cagra.1472s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold1472: 14023-16022 Capsella grandiflora
Cagra.1472s0006 2.0kb downstream 2.0kb downstream 4202 true Scaffold1472: 16023-20224 Capsella grandiflora
Cagra.1472s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold1472: 18225-20224 Capsella grandiflora
Cagra.1472s0006 5.0kb upstream 5.0kb upstream 7202 true Scaffold1472: 11023-18224 Capsella grandiflora
Cagra.1472s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold1472: 11023-16022 Capsella grandiflora
Cagra.1472s0006 5.0kb downstream 5.0kb downstream 7202 true Scaffold1472: 16023-23224 Capsella grandiflora
Cagra.1472s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold1472: 18225-23224 Capsella grandiflora
Cagra.1472s0006 10.0kb upstream 10.0kb upstream 12202 true Scaffold1472: 6023-18224 Capsella grandiflora
Cagra.1472s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold1472: 6023-16022 Capsella grandiflora
Cagra.1472s0006 10.0kb downstream 10.0kb downstream 12202 true Scaffold1472: 16023-28224 Capsella grandiflora
Cagra.1472s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold1472: 18225-28224 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375905 5261 Brassicaceae View MSA
123840380 5264 Brassicales-Malvales View MSA
124342947 5266 SBM View MSA
124249329 5268 Malvidae View MSA
124072115 5270 Rosid View MSA
123744980 5271 Pentapetalae View MSA
122794194 5272 Eudicot View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain