Gene : Cagra.0804s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  10
Name:  ? Cagra.0804s0010 Secondary Identifier:  ? PAC:28907172
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CAROTENOID-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5943 Capsella grandiflora pathologic  
Cgrandiflora PWY-5947 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0804s0010 0.5kb upstream 0.5kb upstream 4542 true Scaffold804: 37120-41661 Capsella grandiflora
Cagra.0804s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold804: 41162-41661 Capsella grandiflora
Cagra.0804s0010 0.5kb downstream 0.5kb downstream 4542 true Scaffold804: 36620-41161 Capsella grandiflora
Cagra.0804s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold804: 36620-37119 Capsella grandiflora
Cagra.0804s0010 1.0kb upstream 1.0kb upstream 5042 true Scaffold804: 37120-42161 Capsella grandiflora
Cagra.0804s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold804: 41162-42161 Capsella grandiflora
Cagra.0804s0010 1.0kb downstream 1.0kb downstream 5042 true Scaffold804: 36120-41161 Capsella grandiflora
Cagra.0804s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold804: 36120-37119 Capsella grandiflora
Cagra.0804s0010 2.0kb upstream 2.0kb upstream 5756 true Scaffold804: 37120-42875 Capsella grandiflora
Cagra.0804s0010 2.0kb upstream 2.0kb upstream 1714 false Scaffold804: 41162-42875 Capsella grandiflora
Cagra.0804s0010 2.0kb downstream 2.0kb downstream 6042 true Scaffold804: 35120-41161 Capsella grandiflora
Cagra.0804s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold804: 35120-37119 Capsella grandiflora
Cagra.0804s0010 5.0kb upstream 5.0kb upstream 5756 true Scaffold804: 37120-42875 Capsella grandiflora
Cagra.0804s0010 5.0kb upstream 5.0kb upstream 1714 false Scaffold804: 41162-42875 Capsella grandiflora
Cagra.0804s0010 5.0kb downstream 5.0kb downstream 9042 true Scaffold804: 32120-41161 Capsella grandiflora
Cagra.0804s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold804: 32120-37119 Capsella grandiflora
Cagra.0804s0010 10.0kb upstream 10.0kb upstream 5756 true Scaffold804: 37120-42875 Capsella grandiflora
Cagra.0804s0010 10.0kb upstream 10.0kb upstream 1714 false Scaffold804: 41162-42875 Capsella grandiflora
Cagra.0804s0010 10.0kb downstream 10.0kb downstream 14042 true Scaffold804: 27120-41161 Capsella grandiflora
Cagra.0804s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold804: 27120-37119 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375141 5261 Brassicaceae View MSA
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain