Gene : Carub.0003s3318 C. rubella v1.1
Defline:  (1 of 1) 2.5.1.115 - Homogentisate phytyltransferase / HPT Genomic Order:  3318
Name:  ? Carub.0003s3318 Secondary Identifier:  ? PAC:39239299
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1422 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3318 0.5kb upstream 0.5kb upstream 3476 true scaffold_3: 14058462-14061937 Capsella rubella
Carub.0003s3318 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14058462-14058961 Capsella rubella
Carub.0003s3318 0.5kb downstream 0.5kb downstream 3476 true scaffold_3: 14058962-14062437 Capsella rubella
Carub.0003s3318 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14061938-14062437 Capsella rubella
Carub.0003s3318 1.0kb upstream 1.0kb upstream 3976 true scaffold_3: 14057962-14061937 Capsella rubella
Carub.0003s3318 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14057962-14058961 Capsella rubella
Carub.0003s3318 1.0kb downstream 1.0kb downstream 3976 true scaffold_3: 14058962-14062937 Capsella rubella
Carub.0003s3318 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14061938-14062937 Capsella rubella
Carub.0003s3318 2.0kb upstream 2.0kb upstream 4976 true scaffold_3: 14056962-14061937 Capsella rubella
Carub.0003s3318 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14056962-14058961 Capsella rubella
Carub.0003s3318 2.0kb downstream 2.0kb downstream 4976 true scaffold_3: 14058962-14063937 Capsella rubella
Carub.0003s3318 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14061938-14063937 Capsella rubella
Carub.0003s3318 5.0kb upstream 5.0kb upstream 7976 true scaffold_3: 14053962-14061937 Capsella rubella
Carub.0003s3318 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14053962-14058961 Capsella rubella
Carub.0003s3318 5.0kb downstream 5.0kb downstream 7976 true scaffold_3: 14058962-14066937 Capsella rubella
Carub.0003s3318 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14061938-14066937 Capsella rubella
Carub.0003s3318 10.0kb upstream 10.0kb upstream 12976 true scaffold_3: 14048962-14061937 Capsella rubella
Carub.0003s3318 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14048962-14058961 Capsella rubella
Carub.0003s3318 10.0kb downstream 10.0kb downstream 12976 true scaffold_3: 14058962-14071937 Capsella rubella
Carub.0003s3318 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14061938-14071937 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361831 5261 Brassicaceae View MSA
123829047 5264 Brassicales-Malvales View MSA
124346176 5266 SBM View MSA
124238838 5268 Malvidae View MSA
124061099 5270 Rosid View MSA
123745017 5271 Pentapetalae View MSA
122786578 5272 Eudicot View MSA
122051505 5273 Angiosperm View MSA
121349227 5274 Embryophyte View MSA
123426888 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain