Gene : Carub.0002s0979 C. rubella v1.1
Defline:  (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Genomic Order:  979
Name:  ? Carub.0002s0979 Secondary Identifier:  ? PAC:39243402
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0979 0.5kb upstream 0.5kb upstream 3585 true scaffold_2: 5710820-5714404 Capsella rubella
Carub.0002s0979 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5710820-5711319 Capsella rubella
Carub.0002s0979 0.5kb downstream 0.5kb downstream 3585 true scaffold_2: 5711320-5714904 Capsella rubella
Carub.0002s0979 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5714405-5714904 Capsella rubella
Carub.0002s0979 1.0kb upstream 1.0kb upstream 4085 true scaffold_2: 5710320-5714404 Capsella rubella
Carub.0002s0979 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5710320-5711319 Capsella rubella
Carub.0002s0979 1.0kb downstream 1.0kb downstream 4085 true scaffold_2: 5711320-5715404 Capsella rubella
Carub.0002s0979 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5714405-5715404 Capsella rubella
Carub.0002s0979 2.0kb upstream 2.0kb upstream 5085 true scaffold_2: 5709320-5714404 Capsella rubella
Carub.0002s0979 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5709320-5711319 Capsella rubella
Carub.0002s0979 2.0kb downstream 2.0kb downstream 5085 true scaffold_2: 5711320-5716404 Capsella rubella
Carub.0002s0979 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5714405-5716404 Capsella rubella
Carub.0002s0979 5.0kb upstream 5.0kb upstream 8085 true scaffold_2: 5706320-5714404 Capsella rubella
Carub.0002s0979 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5706320-5711319 Capsella rubella
Carub.0002s0979 5.0kb downstream 5.0kb downstream 8085 true scaffold_2: 5711320-5719404 Capsella rubella
Carub.0002s0979 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5714405-5719404 Capsella rubella
Carub.0002s0979 10.0kb upstream 10.0kb upstream 13085 true scaffold_2: 5701320-5714404 Capsella rubella
Carub.0002s0979 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5701320-5711319 Capsella rubella
Carub.0002s0979 10.0kb downstream 10.0kb downstream 13085 true scaffold_2: 5711320-5724404 Capsella rubella
Carub.0002s0979 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5714405-5724404 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364067 5261 Brassicaceae View MSA
123834541 5264 Brassicales-Malvales View MSA
124340629 5266 SBM View MSA
124240953 5268 Malvidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain