Gene : Carub.0008s2489 C. rubella v1.1
Defline:  (1 of 4) PTHR31235//PTHR31235:SF27 - FAMILY NOT NAMED // PEROXIDASE 62-RELATED Genomic Order:  2489
Name:  ? Carub.0008s2489 Secondary Identifier:  ? PAC:39251074
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2489 0.5kb upstream 0.5kb upstream 1969 true scaffold_8: 12019628-12021596 Capsella rubella
Carub.0008s2489 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12021097-12021596 Capsella rubella
Carub.0008s2489 0.5kb downstream 0.5kb downstream 1969 true scaffold_8: 12019128-12021096 Capsella rubella
Carub.0008s2489 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12019128-12019627 Capsella rubella
Carub.0008s2489 1.0kb upstream 1.0kb upstream 2469 true scaffold_8: 12019628-12022096 Capsella rubella
Carub.0008s2489 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12021097-12022096 Capsella rubella
Carub.0008s2489 1.0kb downstream 1.0kb downstream 2469 true scaffold_8: 12018628-12021096 Capsella rubella
Carub.0008s2489 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12018628-12019627 Capsella rubella
Carub.0008s2489 2.0kb upstream 2.0kb upstream 3469 true scaffold_8: 12019628-12023096 Capsella rubella
Carub.0008s2489 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12021097-12023096 Capsella rubella
Carub.0008s2489 2.0kb downstream 2.0kb downstream 3469 true scaffold_8: 12017628-12021096 Capsella rubella
Carub.0008s2489 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12017628-12019627 Capsella rubella
Carub.0008s2489 5.0kb upstream 5.0kb upstream 6469 true scaffold_8: 12019628-12026096 Capsella rubella
Carub.0008s2489 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12021097-12026096 Capsella rubella
Carub.0008s2489 5.0kb downstream 5.0kb downstream 6469 true scaffold_8: 12014628-12021096 Capsella rubella
Carub.0008s2489 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12014628-12019627 Capsella rubella
Carub.0008s2489 10.0kb upstream 10.0kb upstream 11469 true scaffold_8: 12019628-12031096 Capsella rubella
Carub.0008s2489 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12021097-12031096 Capsella rubella
Carub.0008s2489 10.0kb downstream 10.0kb downstream 11469 true scaffold_8: 12009628-12021096 Capsella rubella
Carub.0008s2489 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12009628-12019627 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510955 5273 Angiosperm View MSA
122370378 5261 Brassicaceae View MSA
123799950 5264 Brassicales-Malvales View MSA
124297418 5266 SBM View MSA
124149313 5268 Malvidae View MSA
123875141 5270 Rosid View MSA
123459014 5271 Pentapetalae View MSA
122494410 5272 Eudicot View MSA
120784028 5274 Embryophyte View MSA
122825969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain