Gene : Carub.0005s2147 C. rubella v1.1
Defline:  (1 of 3) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33B Genomic Order:  2147
Name:  ? Carub.0005s2147 Secondary Identifier:  ? PAC:39226784
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2147 0.5kb upstream 0.5kb upstream 6482 true scaffold_5: 10494486-10500967 Capsella rubella
Carub.0005s2147 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10500468-10500967 Capsella rubella
Carub.0005s2147 0.5kb downstream 0.5kb downstream 6482 true scaffold_5: 10493986-10500467 Capsella rubella
Carub.0005s2147 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10493986-10494485 Capsella rubella
Carub.0005s2147 1.0kb upstream 1.0kb upstream 6982 true scaffold_5: 10494486-10501467 Capsella rubella
Carub.0005s2147 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10500468-10501467 Capsella rubella
Carub.0005s2147 1.0kb downstream 1.0kb downstream 6982 true scaffold_5: 10493486-10500467 Capsella rubella
Carub.0005s2147 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10493486-10494485 Capsella rubella
Carub.0005s2147 2.0kb upstream 2.0kb upstream 7982 true scaffold_5: 10494486-10502467 Capsella rubella
Carub.0005s2147 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10500468-10502467 Capsella rubella
Carub.0005s2147 2.0kb downstream 2.0kb downstream 7982 true scaffold_5: 10492486-10500467 Capsella rubella
Carub.0005s2147 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10492486-10494485 Capsella rubella
Carub.0005s2147 5.0kb upstream 5.0kb upstream 10982 true scaffold_5: 10494486-10505467 Capsella rubella
Carub.0005s2147 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10500468-10505467 Capsella rubella
Carub.0005s2147 5.0kb downstream 5.0kb downstream 10982 true scaffold_5: 10489486-10500467 Capsella rubella
Carub.0005s2147 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10489486-10494485 Capsella rubella
Carub.0005s2147 10.0kb upstream 10.0kb upstream 15982 true scaffold_5: 10494486-10510467 Capsella rubella
Carub.0005s2147 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10500468-10510467 Capsella rubella
Carub.0005s2147 10.0kb downstream 10.0kb downstream 15982 true scaffold_5: 10484486-10500467 Capsella rubella
Carub.0005s2147 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10484486-10494485 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374150 5261 Brassicaceae View MSA
123828237 5264 Brassicales-Malvales View MSA
124337921 5266 SBM View MSA
124254654 5268 Malvidae View MSA
124060687 5270 Rosid View MSA
123752056 5271 Pentapetalae View MSA
122787734 5272 Eudicot View MSA
122044199 5273 Angiosperm View MSA
121343889 5274 Embryophyte View MSA
123428072 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain