Gene : Carub.0004s1397 C. rubella v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1397
Name:  ? Carub.0004s1397 Secondary Identifier:  ? PAC:39236769
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CAROTENOID-PWY Capsella rubella pathologic  
Crubella PWY-5943 Capsella rubella pathologic  
Crubella PWY-5947 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1397 0.5kb upstream 0.5kb upstream 4769 true scaffold_4: 8634212-8638980 Capsella rubella
Carub.0004s1397 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8638481-8638980 Capsella rubella
Carub.0004s1397 0.5kb downstream 0.5kb downstream 4769 true scaffold_4: 8633712-8638480 Capsella rubella
Carub.0004s1397 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8633712-8634211 Capsella rubella
Carub.0004s1397 1.0kb upstream 1.0kb upstream 5269 true scaffold_4: 8634212-8639480 Capsella rubella
Carub.0004s1397 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8638481-8639480 Capsella rubella
Carub.0004s1397 1.0kb downstream 1.0kb downstream 5269 true scaffold_4: 8633212-8638480 Capsella rubella
Carub.0004s1397 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8633212-8634211 Capsella rubella
Carub.0004s1397 2.0kb upstream 2.0kb upstream 6269 true scaffold_4: 8634212-8640480 Capsella rubella
Carub.0004s1397 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8638481-8640480 Capsella rubella
Carub.0004s1397 2.0kb downstream 2.0kb downstream 6269 true scaffold_4: 8632212-8638480 Capsella rubella
Carub.0004s1397 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8632212-8634211 Capsella rubella
Carub.0004s1397 5.0kb upstream 5.0kb upstream 9269 true scaffold_4: 8634212-8643480 Capsella rubella
Carub.0004s1397 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8638481-8643480 Capsella rubella
Carub.0004s1397 5.0kb downstream 5.0kb downstream 9269 true scaffold_4: 8629212-8638480 Capsella rubella
Carub.0004s1397 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8629212-8634211 Capsella rubella
Carub.0004s1397 10.0kb upstream 10.0kb upstream 14269 true scaffold_4: 8634212-8648480 Capsella rubella
Carub.0004s1397 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8638481-8648480 Capsella rubella
Carub.0004s1397 10.0kb downstream 10.0kb downstream 14269 true scaffold_4: 8624212-8638480 Capsella rubella
Carub.0004s1397 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8624212-8634211 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375141 5261 Brassicaceae View MSA
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain