Gene : Seita.2G410800 S. italica v2.2
Defline:  (1 of 2) 1.5.1.3//2.1.1.45 - Dihydrofolate reductase / Tetrahydrofolate dehydrogenase Genomic Order:  4108
Name:  ? Seita.2G410800 Secondary Identifier:  ? PAC:32721231
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3841 Setaria italica pathologic  
Sitalica PWY-6612 Setaria italica pathologic  
Sitalica PWY-6614 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7199 Setaria italica pathologic  
Sitalica PWY-7200 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G410800 0.5kb upstream 0.5kb upstream 7175 true scaffold_2: 46935182-46942356 Setaria italica
Seita.2G410800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46935182-46935681 Setaria italica
Seita.2G410800 0.5kb downstream 0.5kb downstream 7175 true scaffold_2: 46935682-46942856 Setaria italica
Seita.2G410800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46942357-46942856 Setaria italica
Seita.2G410800 1.0kb upstream 1.0kb upstream 7675 true scaffold_2: 46934682-46942356 Setaria italica
Seita.2G410800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46934682-46935681 Setaria italica
Seita.2G410800 1.0kb downstream 1.0kb downstream 7675 true scaffold_2: 46935682-46943356 Setaria italica
Seita.2G410800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46942357-46943356 Setaria italica
Seita.2G410800 2.0kb upstream 2.0kb upstream 8675 true scaffold_2: 46933682-46942356 Setaria italica
Seita.2G410800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46933682-46935681 Setaria italica
Seita.2G410800 2.0kb downstream 2.0kb downstream 8675 true scaffold_2: 46935682-46944356 Setaria italica
Seita.2G410800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46942357-46944356 Setaria italica
Seita.2G410800 5.0kb upstream 5.0kb upstream 11675 true scaffold_2: 46930682-46942356 Setaria italica
Seita.2G410800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46930682-46935681 Setaria italica
Seita.2G410800 5.0kb downstream 5.0kb downstream 11675 true scaffold_2: 46935682-46947356 Setaria italica
Seita.2G410800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46942357-46947356 Setaria italica
Seita.2G410800 10.0kb upstream 10.0kb upstream 16675 true scaffold_2: 46925682-46942356 Setaria italica
Seita.2G410800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46925682-46935681 Setaria italica
Seita.2G410800 10.0kb downstream 10.0kb downstream 16675 true scaffold_2: 46935682-46952356 Setaria italica
Seita.2G410800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46942357-46952356 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193158 5267 Panicoideae View MSA
124576783 5269 Grass View MSA
122041907 5273 Angiosperm View MSA
121345404 5274 Embryophyte View MSA
123424391 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.35        
cufflinks 4.518       High
cufflinks 2.866        
cufflinks 2.813        
cufflinks 2.72        
cufflinks 4.594       High
cufflinks 2.22       Low
cufflinks 2.073       Low
cufflinks 3.164        
cufflinks 2.752        
cufflinks 3.437        
cufflinks 3.6        
cufflinks 3.293        
cufflinks 3.133        
cufflinks 3.165        
cufflinks 1.727       Low
cufflinks 3.383        
cufflinks 2.738        
cufflinks 2.518        
cufflinks 3.413        

0 Strain