An InterMine interface to data from Phytozome
Phytomine contains annotated proteome data from the JGI flagship genomes:
Either enter a GO term into the identifier box or create a list of GO identifiers from another query or paste into the list box. If supplying a list, type the name of the saved list pulldown menu.
Show all the proteins from a particular organism.
Search for proteins in any organism with two specified PFAM (or Panther...) domains
Look up the GO terms associated with a single protein, or save a list of proteins and look up GO terms for all proteins on your list.
Displays the conceptual translation of a transcript's CDS
Displays the nucleotide sequence of a specific transcript.
Display the nucleotide sequence of the CDS of a specific transcript.
Find the direct child terms of a specific GO term
Look up the GO terms associated with a gene, or use a saved list of genes and look up the GO terms associated with all genes on the list.
Displays the annotated peptide sequence for a specific protein.
These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own