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Proteins

Protein annotation (including domain annotation) from Phytozome.
Data sets

Phytomine contains annotated proteome data from the JGI flagship genomes:

As well as the proteomes of other JGI and model organism genomes
Bulk download
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

Protein Domains with GO terms.

GO term lookup.

Proteins with a PFAM Domain in a specific organism.

InterproScan results for specific organism.

All proteins for a specific organism

Proteins with a specific PANTHER Domain in any organism.

Show all proteins in a specific organism with polypeptide sequence.

Proteins with Two Specific PFAM Domains

GO Terms for a protein or list of proteins

Peptide sequence for a specific transcript

Nucleotide sequence for a specific transcript

CDS sequence for a specific transcript

Children of a specific GO term

All Located Protein Domains for an Organism

All Pathways for an Organism

GO-Annotations

Peptide sequence for a specific protein

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own

ProteinDomain, Protein