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Genomics

The gene structure and other genome annotation in PhytoMine are provided by a variety of curated source databases. In most cases PhytoMine includes all genome features that have chromosomal locations.
Data sets
Bulk download

Phytomine contains genomic data from the JGI flagship genomes:

In addition, we have also included genomes of early releases of data, from collaborators and from the model organism community:
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

Show all UTRs for a specified gene with nucleotide sequence.

Gene Synonyms

Gene & Proteins.

Show all mRNAs for a specified gene with nucleotide sequence.

Gene, Transcript, Protein names for a specific gene

Show the DNA sequence flanking a specified gene.

Show all CDSs for a specified gene with nucleotide sequence.

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own