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Genomics

The gene structure and other genome annotation in PhytoMine are provided by a variety of curated source databases. In most cases PhytoMine includes all genome features that have chromosomal locations.
Data sets
Bulk download

Phytomine contains genomic data from the JGI flagship genomes:

In addition, we have also included genomes of early releases of data, from collaborators and from the model organism community:
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

Show all CDSs for a specified gene with nucleotide sequence.

Show the DNA sequence flanking a specified gene.

Show all mRNAs for a specified gene with nucleotide sequence.

Gene & Proteins.

Show all UTRs for a specified gene with nucleotide sequence.

Gene, Transcript, Protein names for a specific gene

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own