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Orthologs and Paralogs from Phytozome.
Current data
Ortholog/Paralog Data
Phytozome has compiled a collection orthologs and paralogs for the genes in our database.

Ortholog calls were generated using inParanoid 4.1. InParanoid was run on proteome sequences for all possible organism-organism pairs in Phytozome using the default two-pass blast strategy. Genes from different species that fell in the same InParanoid ortholog cluster were considered orthologs.

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. Remm M, Storm CE and Sonnhammer EL. J. Mol Biol. 2001 Dec 14.

Bulk download
Bulk data files for all organisms in Phytozome are available for download from the JGI Download Portal .
Related template queries

All homologs of a specific gene in any organism

Homologous genes in two specific species

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own