Gene : Pavir.J08443 P. virgatum

Defline:  (1 of 9) K00026 - malate dehydrogenase (MDH2) Name:  ? Pavir.J08443
Secondary Identifier:  ? PAC:30277698

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Panicum virgatum pathologic  
Pvirgatum PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Panicum virgatum pathologic  
Pvirgatum PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY gluconeogenesis I Panicum virgatum pathologic  
Pvirgatum GLYOXYLATE-BYPASS glyoxylate cycle Panicum virgatum pathologic  
Pvirgatum PWY-5690 TCA cycle II (plants and fungi) Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.J08443 5.0kb upstream 5.0kb upstream 9734   true contig11687: 1-9734 Panicum virgatum
Pavir.J08443 5.0kb upstream 5.0kb upstream 4815   false contig11687: 1-4815 Panicum virgatum
Pavir.J08443 5.0kb downstream 5.0kb downstream 7114   true contig11687: 4816-11929 Panicum virgatum
Pavir.J08443 5.0kb downstream 5.0kb downstream 2195   false contig11687: 9735-11929 Panicum virgatum

299 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Pavir.J08443 P. virgatum GSVIVG01014231001
Pavir.J08443 V. vinifera Pavir.Ca00978
Pavir.J08443 V. vinifera Pavir.J12238
Pavir.J08443 A. halleri Araha.52017s0001
Pavir.J08443 A. halleri Araha.5485s0004
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 C. grandiflora Cagra.1472s0006
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 C. papaya evm.TU.supercontig_131.66
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 R. communis 30150.t000004
Pavir.J08443 R. communis 29900.t000052
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 C. sativus Cucsa.273480
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 C. sinensis orange1.1g018314m.g
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 A. thaliana AT3G15020
Pavir.J08443 A. thaliana AT1G53240
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238
Pavir.J08443 E. salsugineum Thhalv10011552m.g
Pavir.J08443 P. virgatum Pavir.Ca00978
Pavir.J08443 P. virgatum Pavir.J12238

26 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   29479.865 OK   High 248.622   High  
  cufflinks   12877.471 OK   High 128.936   High  
  cufflinks   5741.987 OK   High 58.959      
  cufflinks   3166.431 OK   High 31.025   Low  
  cufflinks   3985.656 OK   High 46.794      
  cufflinks   31939.752 OK   High 264.906   High  
  cufflinks   6048.771 OK   High 70.904      
  cufflinks   6219.975 OK   High 60.193      
  cufflinks   5613.093 OK   High 59.087      
  cufflinks   2666.145 OK   High 29.935   Low  
  cufflinks   3563.049 OK   High 28.918   Low  
  cufflinks   2525.045 OK   High 29.612   Low  
  cufflinks   7723.08 OK   High 78.094      
  cufflinks   3614.111 OK   High 29.877   Low  
  cufflinks   5360.08 OK   High 56.658      
  cufflinks   4814.48 OK   High 53.012      
  cufflinks   2882.934 OK   High 32.526      
  cufflinks   25729.03 OK   High 200.331   High  
  cufflinks   6117.071 OK   High 71.317      
  cufflinks   5811.866 OK   High 53.917      
  cufflinks   5272.806 OK   High 54.985      
  cufflinks   5885.025 OK   High 66.609      
  cufflinks   6101.734 OK   High 72.716      
  cufflinks   3866.775 OK   High 40.821      
  cufflinks   2547.587 OK   High 26.689   Low  
  cufflinks   5511.071 OK   High 56.571